Difference between revisions of "DTTPtm"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8368 RXN-8368] == * direction: ** left-to-right * common-name: ** 1-18:2-2-18:3-monogalactosyld...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overfl...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8368 RXN-8368] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 1-18:2-2-18:3-monogalactosyldiacylglycerol desaturase
+
** isocitrate dehydrogenase (nadp+)
−
* ec-number:
+
** nadp-dependent isocitrate dehydrogenase
−
** [http://enzyme.expasy.org/EC/1.14.19.35 ec-1.14.19.35]
+
* synonymous:
 +
** nadp+-linked isocitrate dehydrogenase
 +
** nadp+-idh
 +
** idp1
 +
** nadp-linked isocitrate dehydrogenase
 +
** oxalosuccinate decarboxylase
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** idh (ambiguous)
 +
** nadp isocitric dehydrogenase
 +
** nadp-specific isocitrate dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** oxalsuccinic decarboxylase
 +
** idp2
 +
** idp
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** nadp-dependent isocitric dehydrogenase
 +
** idp3
 +
** nadp+-icdh
 +
** isocitrate (nadp) dehydrogenase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-8166]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-8168]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03069]]
+
* Gene: [[SJ08749]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09228]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-782]], glycolipid desaturation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-782 PWY-782]
 
−
** '''16''' reactions found over '''28''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=1-18:2-2-18:3-monogalactosyldiacylglycerol desaturase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25591 25591]
−
{{#set: ec-number=ec-1.14.19.35}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
−
{{#set: nb pathway associated=1}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common-name=isocitrate dehydrogenase (nadp+)|nadp-dependent isocitrate dehydrogenase}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: synonymous=idh (ambiguous)|oxalosuccinate decarboxylase|nadp-linked isocitrate dehydrogenase|idp3|idp|isocitrate dehydrogenase (nadp-dependent)|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|nadp+-icdh|oxalsuccinic decarboxylase|nadp isocitric dehydrogenase|idp1|nadp+-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|nadp+-idh|idp2|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|dual-cofactor-specific isocitrate dehydrogenase|isocitrate (nadp) dehydrogenase|nadp-specific isocitrate dehydrogenase}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:28, 26 August 2019

Reaction RXN-9951

  • direction:
    • reversible
  • common-name:
    • isocitrate dehydrogenase (nadp+)
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • nadp+-linked isocitrate dehydrogenase
    • nadp+-idh
    • idp1
    • nadp-linked isocitrate dehydrogenase
    • oxalosuccinate decarboxylase
    • isocitrate dehydrogenase (nadp-dependent)
    • idh (ambiguous)
    • nadp isocitric dehydrogenase
    • nadp-specific isocitrate dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • oxalsuccinic decarboxylase
    • idp2
    • idp
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • dual-cofactor-specific isocitrate dehydrogenase
    • nadp-dependent isocitric dehydrogenase
    • idp3
    • nadp+-icdh
    • isocitrate (nadp) dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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