Difference between revisions of "DTTPtm"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overfl...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN] == * direction: ** reversible *...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN] ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** isocitrate dehydrogenase (nadp+)
+
** glutaconyl-coa decarboxylase
−
** nadp-dependent isocitrate dehydrogenase
+
* ec-number:
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/4.1.1.70 ec-4.1.1.70]
−
** nadp+-linked isocitrate dehydrogenase
 
−
** nadp+-idh
 
−
** idp1
 
−
** nadp-linked isocitrate dehydrogenase
 
−
** oxalosuccinate decarboxylase
 
−
** isocitrate dehydrogenase (nadp-dependent)
 
−
** idh (ambiguous)
 
−
** nadp isocitric dehydrogenase
 
−
** nadp-specific isocitrate dehydrogenase
 
−
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
−
** oxalsuccinic decarboxylase
 
−
** idp2
 
−
** idp
 
−
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
−
** dual-cofactor-specific isocitrate dehydrogenase
 
−
** nadp-dependent isocitric dehydrogenase
 
−
** idp3
 
−
** nadp+-icdh
 
−
** isocitrate (nadp) dehydrogenase
 
−
</div>
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[GLUTACONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CROTONYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08749]]
+
* Gene: [[SJ07909]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 +
** '''6''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25591 25591]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23972 23972]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03028 R03028]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=isocitrate dehydrogenase (nadp+)|nadp-dependent isocitrate dehydrogenase}}
+
{{#set: common-name=glutaconyl-coa decarboxylase}}
−
{{#set: synonymous=idh (ambiguous)|oxalosuccinate decarboxylase|nadp-linked isocitrate dehydrogenase|idp3|idp|isocitrate dehydrogenase (nadp-dependent)|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|nadp+-icdh|oxalsuccinic decarboxylase|nadp isocitric dehydrogenase|idp1|nadp+-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|nadp+-idh|idp2|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|dual-cofactor-specific isocitrate dehydrogenase|isocitrate (nadp) dehydrogenase|nadp-specific isocitrate dehydrogenase}}
+
{{#set: ec-number=ec-4.1.1.70}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN

  • direction:
    • reversible
  • common-name:
    • glutaconyl-coa decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5177, glutaryl-CoA degradation: PWY-5177
    • 5 reactions found over 5 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 6 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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