Difference between revisions of "DUDPKIN-RXN"

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(Created page with "Category:reaction == Reaction 3.4.24.64-RXN == * direction: ** left-to-right * common-name: ** mitochondrial-processing peptidase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction BETA-UREIDOPROPIONASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.6 ec-3.5.1.6] == Reaction formu...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.24.64-RXN ==
+
== Reaction BETA-UREIDOPROPIONASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** mitochondrial-processing peptidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.24.64 ec-3.4.24.64]
+
** [http://enzyme.expasy.org/EC/3.5.1.6 ec-3.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Mitochondrial-Preproteins]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MPP-processed-mitochonrial-proteins]][c] '''+''' 1 [[Peptides-holder]][c]
+
* 1 [[3-UREIDO-PROPIONATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[B-ALANINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13715]]
+
* Gene: [[SJ06121]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09586]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08789]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13651]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-3982]], uracil degradation I (reductive):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P11913 P11913]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11185 11185]
−
** [http://www.uniprot.org/uniprot/P20069 P20069]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P23955 P23955]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00905 R00905]
−
** [http://www.uniprot.org/uniprot/Q9T2S9 Q9T2S9]
 
−
** [http://www.uniprot.org/uniprot/Q9T2S8 Q9T2S8]
 
−
** [http://www.uniprot.org/uniprot/P10507 P10507]
 
−
** [http://www.uniprot.org/uniprot/P29677 P29677]
 
−
** [http://www.uniprot.org/uniprot/Q03346 Q03346]
 
−
** [http://www.uniprot.org/uniprot/Q41440 Q41440]
 
−
** [http://www.uniprot.org/uniprot/Q9UG64 Q9UG64]
 
−
** [http://www.uniprot.org/uniprot/Q9P7X1 Q9P7X1]
 
−
** [http://www.uniprot.org/uniprot/P11914 P11914]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=mitochondrial-processing peptidase}}
+
{{#set: ec-number=ec-3.5.1.6}}
−
{{#set: ec-number=ec-3.4.24.64}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:07, 14 January 2021

Reaction BETA-UREIDOPROPIONASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3982, uracil degradation I (reductive):
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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