Difference between revisions of "DXPREDISOM-RXN"
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(Created page with "Category:reaction == Reaction NICOTINAMIDE-N-METHYLTRANSFERASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.1 ec-2.1.1.1] == Rea...") |
(Created page with "Category:reaction == Reaction DXPREDISOM-RXN == * direction: ** reversible * common-name: ** 1-deoxy-d-xylulose 5-phosphate reductoisomerase * ec-number: ** [http://enzyme...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction DXPREDISOM-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** reversible |
| + | * common-name: | ||
| + | ** 1-deoxy-d-xylulose 5-phosphate reductoisomerase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.267 ec-1.1.1.267] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ11908]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-7560]], methylerythritol phosphate pathway II: | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| − | * METANETX-RXN : | + | * METANETX-RXN : MNXR97830 |
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13720 13720] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688] |
| − | + | {{#set: direction=reversible}} | |
| − | + | {{#set: common-name=1-deoxy-d-xylulose 5-phosphate reductoisomerase}} | |
| − | {{#set: | + | {{#set: ec-number=ec-1.1.1.267}} |
| − | {{#set: ec-number=ec- | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction DXPREDISOM-RXN
- direction:
- reversible
- common-name:
- 1-deoxy-d-xylulose 5-phosphate reductoisomerase
- ec-number:
Reaction formula
- 1 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE[c] + 1 NADP[c] <=> 1 DEOXYXYLULOSE-5P[c] + 1 NADPH[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ11908
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7560, methylerythritol phosphate pathway II:
- 9 reactions found over 9 reactions in the full pathway
- NONMEVIPP-PWY, methylerythritol phosphate pathway I:
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
