Difference between revisions of "DXPREDISOM-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] == * direction: ** left-to-right * common-name: ** porphobil...")
(Created page with "Category:reaction == Reaction DXPREDISOM-RXN == * direction: ** reversible * common-name: ** 1-deoxy-d-xylulose 5-phosphate reductoisomerase * ec-number: ** [http://enzyme...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] ==
+
== Reaction DXPREDISOM-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** porphobilinogen synthase
+
** 1-deoxy-d-xylulose 5-phosphate reductoisomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
+
** [http://enzyme.expasy.org/EC/1.1.1.267 ec-1.1.1.267]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07541]]
+
* Gene: [[SJ11908]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 17: Line 17:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07531]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
* [[PWY-7560]], methylerythritol phosphate pathway II:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
+
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR97830
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13720 13720]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P06214 P06214]
+
{{#set: common-name=1-deoxy-d-xylulose 5-phosphate reductoisomerase}}
−
** [http://www.uniprot.org/uniprot/P13716 P13716]
+
{{#set: ec-number=ec-1.1.1.267}}
−
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P30124 P30124]
 
−
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
 
−
** [http://www.uniprot.org/uniprot/P30950 P30950]
 
−
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 
−
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 
−
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 
−
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 
−
** [http://www.uniprot.org/uniprot/P10518 P10518]
 
−
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 
−
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 
−
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 
−
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 
−
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 
−
** [http://www.uniprot.org/uniprot/P05373 P05373]
 
−
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 
−
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 
−
** [http://www.uniprot.org/uniprot/P43210 P43210]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=porphobilinogen synthase}}
 
−
{{#set: ec-number=ec-4.2.1.24}}
 
−
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction DXPREDISOM-RXN

  • direction:
    • reversible
  • common-name:
    • 1-deoxy-d-xylulose 5-phosphate reductoisomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97830
  • RHEA:
  • LIGAND-RXN:





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