Difference between revisions of "Dermatan-NAcGal-4-sulfates"

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(Created page with "Category:gene == Gene SJ11200 == * transcription-direction: ** positive * right-end-position: ** 365777 * left-end-position: ** 362204 * centisome-position: ** 95.96028...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] == * direction: ** left-to-right * common-name: ** cdp-diacy...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ11200 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] ==
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* transcription-direction:
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* direction:
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** positive
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** left-to-right
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* right-end-position:
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* common-name:
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** 365777
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** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
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* left-end-position:
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* ec-number:
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** 362204
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** [http://enzyme.expasy.org/EC/2.7.8.5 ec-2.7.8.5]
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* centisome-position:
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== Reaction formula ==
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** 95.96028   
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* 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ08733]]
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== Reaction(s) associated ==
 
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* [[4.1.1.81-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Pathway(s) associated ==
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** Category: [[orthology]]
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* [[PWY-5443]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=positive}}
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== Pathway(s) ==
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{{#set: right-end-position=365777}}
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* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
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{{#set: left-end-position=362204}}
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** '''3''' reactions found over '''3''' reactions in the full pathway
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{{#set: centisome-position=95.96028    }}
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* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** '''2''' reactions found over '''3''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
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{{#set: nb pathway associated=1}}
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** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
 +
** '''6''' reactions found over '''16''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
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** [http://www.uniprot.org/uniprot/P46322 P46322]
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** [http://www.uniprot.org/uniprot/P44528 P44528]
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** [http://www.uniprot.org/uniprot/P47360 P47360]
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** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
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** [http://www.uniprot.org/uniprot/O25660 O25660]
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** [http://www.uniprot.org/uniprot/O51663 O51663]
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** [http://www.uniprot.org/uniprot/O67908 O67908]
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** [http://www.uniprot.org/uniprot/Q49839 Q49839]
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** [http://www.uniprot.org/uniprot/P75520 P75520]
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** [http://www.uniprot.org/uniprot/P74372 P74372]
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** [http://www.uniprot.org/uniprot/Q48959 Q48959]
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** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
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{{#set: direction=left-to-right}}
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{{#set: common-name=cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase}}
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{{#set: ec-number=ec-2.7.8.5}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=6}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:28, 27 August 2019

Reaction PHOSPHAGLYPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5269, cardiolipin biosynthesis II: PWY-5269
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-1545, cardiolipin biosynthesis III: PWY0-1545
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5668, cardiolipin biosynthesis I: PWY-5668
    • 3 reactions found over 3 reactions in the full pathway
  • PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic): PWY4FS-8
    • 3 reactions found over 2 reactions in the full pathway
  • PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic): PWY4FS-7
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus): PWY-7817
    • 6 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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