Difference between revisions of "Dicarboxylate"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] == * direction: ** reversible * common-name: ** phosphogluco...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-5293 RXN3O-5293] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/E...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-5293 RXN3O-5293] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** phosphoglucomutase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.2.2 ec-5.4.2.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/1.3.1.10 ec-1.3.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLC-1-P]][c] '''<=>''' 1 [[D-glucopyranose-6-phosphate]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Stearoyl-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05004]]
+
* Gene: [[SJ00320]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18341]]
+
* Gene: [[SJ03883]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12510]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02279]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12467]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
−
* [[PWY-6737]], starch degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6737 PWY-6737]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7900]], glycogen biosynthesis III (from &alpha;-maltose 1-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7900 PWY-7900]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6731]], starch degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6731 PWY-6731]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7343]], UDP-&alpha;-D-glucose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5940]], streptomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7902]], glucosylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7902 PWY-7902]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: ec-number=ec-2.3.1.86|ec-1.3.1.10}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23539 23539]
+
{{#set: nb gene associated=2}}
−
* PIR:
+
{{#set: nb pathway associated=1}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41801 A41801]
+
{{#set: reconstruction category=annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A53614 A53614]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B53614 B53614]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70650 E70650]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64803 G64803]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81947 G81947]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39487 I39487]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I41215 I41215]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRB PMRB]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRBI PMRBI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRT PMRT]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S10741 S10741]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39397 S39397]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41199 S41199]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41200 S41200]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76847 S76847]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78440 S78440]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04326 T04326]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04327 T04327]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12574 T12574]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52656 T52656]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P36871 P36871]
 
−
** [http://www.uniprot.org/uniprot/P40390 P40390]
 
−
** [http://www.uniprot.org/uniprot/P40391 P40391]
 
−
** [http://www.uniprot.org/uniprot/P95090 P95090]
 
−
** [http://www.uniprot.org/uniprot/P36938 P36938]
 
−
** [http://www.uniprot.org/uniprot/P57002 P57002]
 
−
** [http://www.uniprot.org/uniprot/P38569 P38569]
 
−
** [http://www.uniprot.org/uniprot/P31120 P31120]
 
−
** [http://www.uniprot.org/uniprot/P00949 P00949]
 
−
** [http://www.uniprot.org/uniprot/P38652 P38652]
 
−
** [http://www.uniprot.org/uniprot/Q7M2K5 Q7M2K5]
 
−
** [http://www.uniprot.org/uniprot/Q16106 Q16106]
 
−
** [http://www.uniprot.org/uniprot/P33401 P33401]
 
−
** [http://www.uniprot.org/uniprot/P37012 P37012]
 
−
** [http://www.uniprot.org/uniprot/P74643 P74643]
 
−
** [http://www.uniprot.org/uniprot/Q51847 Q51847]
 
−
** [http://www.uniprot.org/uniprot/P93804 P93804]
 
−
** [http://www.uniprot.org/uniprot/P93805 P93805]
 
−
** [http://www.uniprot.org/uniprot/P93262 P93262]
 
−
** [http://www.uniprot.org/uniprot/Q9SCY0 Q9SCY0]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00959 R00959]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoglucomutase}}
 
−
{{#set: ec-number=ec-5.4.2.2}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=18}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN3O-5293

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3O-355, stearate biosynthesis III (fungi): PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=Dicarboxylate&oldid=22672"