Difference between revisions of "EDTA"

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(Created page with "Category:gene == Gene SJ08124 == * transcription-direction: ** negative * right-end-position: ** 384435 * left-end-position: ** 376919 * centisome-position: ** 84.67312...")
(Created page with "Category:gene == Gene SJ19719 == * transcription-direction: ** positive * right-end-position: ** 180530 * left-end-position: ** 162989 * centisome-position: ** 73.356346...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ08124 ==
+
== Gene SJ19719 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 384435
+
** 180530
 
* left-end-position:
 
* left-end-position:
−
** 376919
+
** 162989
 
* centisome-position:
 
* centisome-position:
−
** 84.67312    
+
** 73.356346    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ATPASE-RXN]]
+
* [[DIHYDROXYISOVALDEHYDRAT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-12195]]
+
* [[DIHYDROXYMETVALDEHYDRAT-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12196]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5462]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGLUCONDEHYDRAT-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11717]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7210]]
+
* [[VALSYN-PWY]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[PWY-7111]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[ILEUSYN-PWY]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6545]]
+
* [[PWY-5101]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-5104]]
−
{{#set: right-end-position=384435}}
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
{{#set: left-end-position=376919}}
+
* [[PWY-5103]]
−
{{#set: centisome-position=84.67312   }}
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[ENTNER-DOUDOROFF-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6627]]
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=180530}}
 +
{{#set: left-end-position=162989}}
 +
{{#set: centisome-position=73.356346   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=8}}

Revision as of 09:28, 27 August 2019

Gene SJ19719

  • transcription-direction:
    • positive
  • right-end-position:
    • 180530
  • left-end-position:
    • 162989
  • centisome-position:
    • 73.356346

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111
    • 4 reactions found over 5 reactions in the full pathway
  • ILEUSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5101
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5104
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5103
    • 3 reactions found over 7 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6627
    • 3 reactions found over 15 reactions in the full pathway




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