Difference between revisions of "ENOYL-COA-DELTA-ISOM-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2s)-2-isopropylmalate hydro-lyase (2...")
(Created page with "Category:reaction == Reaction ENOYL-COA-DELTA-ISOM-RXN == * direction: ** reversible * common-name: ** δ3-cis-δ2-trans-enoyl-coa isomerase * ec-number: ** [htt...")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-ISOPROPYLMALISOM-RXN ==
+
== Reaction ENOYL-COA-DELTA-ISOM-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydratase
+
** δ3-cis-δ2-trans-enoyl-coa isomerase
−
** (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
+
* ec-number:
 +
** [http://enzyme.expasy.org/EC/5.3.3.8 ec-5.3.3.8]
 
* synonymous:
 
* synonymous:
−
** α-isopropylmalate isomerase
+
** probable enoyl-coa hydratase/isomerase
−
** β-isopropylmalate dehydratase
+
** probable enoyl coa-hydratase/isomerase
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
−
** 3-isopropylmalate hydro-lyase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
* 1 [[CIS-DELTA3-ENOYL-COA]][c] '''<=>''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ22166]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ11169]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09771]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[PWY-5137]], fatty acid &beta;-oxidation III (unsaturated, odd number):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR115860
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
+
** [http://www.uniprot.org/uniprot/P21177 P21177]
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
+
** [http://www.uniprot.org/uniprot/P42126 P42126]
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
+
** [http://www.uniprot.org/uniprot/P07896 P07896]
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
+
** [http://www.uniprot.org/uniprot/P23965 P23965]
−
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
+
** [http://www.uniprot.org/uniprot/Q64592 Q64592]
−
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
+
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
−
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
+
** [http://www.uniprot.org/uniprot/P42125 P42125]
−
** [http://www.uniprot.org/uniprot/P44968 P44968]
+
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
−
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
 
−
** [http://www.uniprot.org/uniprot/P44438 P44438]
 
−
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
 
−
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
 
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
 
−
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
 
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
 
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
 
−
** [http://www.uniprot.org/uniprot/P04787 P04787]
 
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
 
−
** [http://www.uniprot.org/uniprot/P18250 P18250]
 
−
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
 
−
** [http://www.uniprot.org/uniprot/P30126 P30126]
 
−
** [http://www.uniprot.org/uniprot/P50181 P50181]
 
−
** [http://www.uniprot.org/uniprot/P07264 P07264]
 
−
** [http://www.uniprot.org/uniprot/P74207 P74207]
 
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
 
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=3-isopropylmalate dehydratase|(2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)}}
+
{{#set: common-name=&delta;3-cis-&delta;2-trans-enoyl-coa isomerase}}
−
{{#set: synonymous=3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|(2r,3s)-3-isopropylmalate hydro-lyase}}
+
{{#set: ec-number=ec-5.3.3.8}}
−
{{#set: nb gene associated=2}}
+
{{#set: synonymous=probable enoyl-coa hydratase/isomerase|probable enoyl coa-hydratase/isomerase}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction ENOYL-COA-DELTA-ISOM-RXN

  • direction:
    • reversible
  • common-name:
    • δ3-cis-δ2-trans-enoyl-coa isomerase
  • ec-number:
  • synonymous:
    • probable enoyl-coa hydratase/isomerase
    • probable enoyl coa-hydratase/isomerase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5137, fatty acid β-oxidation III (unsaturated, odd number):
    • 1 reactions found over 1 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ENOYL-COA-DELTA-ISOM-RXN&oldid=141607"