Difference between revisions of "ENTDB-RXN"

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(Created page with "Category:reaction == Reaction RXN-13698 == * direction: ** reversible * common-name: ** alanine transaminase * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.2 ec-2.6.1....")
(Created page with "Category:reaction == Reaction RXN-19202 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13] == Reaction formula == * 1 CPD-...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-13698 ==
+
== Reaction RXN-19202 ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
* common-name:
 
** alanine transaminase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.6.1.2 ec-2.6.1.2]
+
** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[CPD-20693]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-20680]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ19809]]
+
* Gene: [[SJ20456]]
** Category: [[annotation]]
+
** Category: [[manual]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ06815]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
+
* [[PWY-7949]], diadinoxanthin and diatoxanthin interconversion:
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
** '''10''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
{{#set: common-name=alanine transaminase}}
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{{#set: ec-number=ec-1.14.13}}
{{#set: ec-number=ec-2.6.1.2}}
+
{{#set: nb gene associated=1}}
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction comment=transformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=sjap}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:04, 5 January 2021

Reaction RXN-19202

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ20456
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-7949, diadinoxanthin and diatoxanthin interconversion:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)

External links