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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction RXN-11026 == | + | == Reaction ExchangeSeed-AMMONIA == |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| − | * common-name:
| |
| − | ** acyl-coa oxidase
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| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c] | + | * 1.0 [[AMMONIA]][C-BOUNDARY] '''<=>''' 1.0 [[AMMONIA]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ07452]]
| |
| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ07451]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ13468]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ03090]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[SJ19669]]
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-7007]], methyl ketone biosynthesis (engineered):
| |
| − | ** '''4''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7288]], fatty acid β-oxidation VII (yeast peroxisome):
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| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-5136]], fatty acid β-oxidation II (plant peroxisome):
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY66-391]], fatty acid β-oxidation VI (mammalian peroxisome):
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| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=reversible}} |
| − | * RHEA:
| + | {{#set: nb gene associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960]
| + | {{#set: nb pathway associated=0}} |
| − | * UNIPROT:
| + | {{#set: reconstruction category=manual}} |
| − | ** [http://www.uniprot.org/uniprot/O65202 O65202]
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.uniprot.org/uniprot/O65201 O65201]
| + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | ** [http://www.uniprot.org/uniprot/O23977 O23977]
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P13711 P13711]
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| − | ** [http://www.uniprot.org/uniprot/P34355 P34355]
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| − | ** [http://www.uniprot.org/uniprot/P07872 P07872]
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| − | ** [http://www.uniprot.org/uniprot/P11356 P11356]
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| − | ** [http://www.uniprot.org/uniprot/P06598 P06598]
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| − | ** [http://www.uniprot.org/uniprot/Q00468 Q00468]
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| − | ** [http://www.uniprot.org/uniprot/Q15067 Q15067]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
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| − | * PIR:
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
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| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
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| − | </div>
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=acyl-coa oxidase}}
| |
| − | {{#set: ec-number=ec-1.3.3.6}}
| |
| − | {{#set: nb gene associated=5}} | |
| − | {{#set: nb pathway associated=4}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
