Difference between revisions of "ExchangeSeed-FE+2"

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(Created page with "Category:reaction == Reaction GDPMANDEHYDRA-RXN == * direction: ** left-to-right * common-name: ** gdp-mannose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction ExchangeSeed-FE+2 == * direction: ** reversible == Reaction formula == * 1.0 FE+2[C-BOUNDARY] '''<=>''' 1.0 FE+2[e] == Gene(s) associ...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction GDPMANDEHYDRA-RXN ==
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== Reaction ExchangeSeed-FE+2 ==
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** gdp-mannose 4,6-dehydratase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/4.2.1.47 ec-4.2.1.47]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
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* 1.0 [[FE+2]][C-BOUNDARY] '''<=>''' 1.0 [[FE+2]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ04008]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21655]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5739]], GDP-D-perosamine biosynthesis:
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-7573]], GDP-mycosamine biosynthesis:
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-5740]], GDP-L-colitose biosynthesis:
 
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose):
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis:
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis:
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23821 23821]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
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{{#set: reconstruction category=manual}}
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* UNIPROT:
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{{#set: reconstruction tool=curation}}
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** [http://www.uniprot.org/uniprot/Q84439 Q84439]
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction source=import_from_medium}}
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{{#set: common-name=gdp-mannose 4,6-dehydratase}}
 
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{{#set: ec-number=ec-4.2.1.47}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=6}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:18, 18 March 2021

Reaction ExchangeSeed-FE+2

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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