Difference between revisions of "ExchangeSeed-FE+2"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11868 RXN-11868] == * direction: ** left-to-right * common-name: ** trna (cytidine32/guanosine3...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11868 RXN-11868] ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
+
** trna (cytidine32/guanosine34-2'-o)-methyltransferase
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** fatty acid synthase
 
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** (3r)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.1.1.205 ec-2.1.1.205]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
−
* synonymous:
 
−
** &beta;-hydroxybutyryl acyl carrier  protein dehydrase
 
−
** &beta;-hydroxybutyryl acyl carrier protein dehydrase
 
−
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 
−
** &beta;-hydroxybutyryl acyl carrier protein (acp) dehydrase
 
−
** crotonoyl-[acyl-carrier-protein] hydratase
 
−
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** 3-hydroxybutyryl acyl carrier protein dehydratase
 
−
** crotonyl acyl carrier protein hydratase
 
−
** enoyl acyl carrier protein hydrase
 
−
</div>
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[Crotonyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[guanosine-34-tRNAs]][c] '''=>''' 1 [[2-O-MeGuan-34-tRNAs]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ01024]]
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10275]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''11''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* RHEA:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42397 42397]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fatty acid synthase|(3r)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
+
{{#set: common-name=trna (cytidine32/guanosine34-2'-o)-methyltransferase}}
−
{{#set: ec-number=ec-2.3.1.86|ec-4.2.1.59|ec-2.3.1.85}}
+
{{#set: ec-number=ec-2.1.1.205}}
−
{{#set: synonymous=enoyl acyl carrier protein hydrase|&beta;-hydroxybutyryl acyl carrier  protein dehydrase|&beta;-hydroxybutyryl acyl carrier protein (acp) dehydrase|&beta;-hydroxybutyryl acyl carrier protein dehydrase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase|crotonoyl-[acyl-carrier-protein] hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|crotonyl acyl carrier protein hydratase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=16}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction RXN-11868

  • direction:
    • left-to-right
  • common-name:
    • trna (cytidine32/guanosine34-2'-o)-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6829, tRNA methylation (yeast): PWY-6829
    • 11 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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