Difference between revisions of "ExchangeSeed-NA+"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN490-3641 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.57 ec-1.14.11.57] * synonymous: ** proline...")
(Created page with "Category:reaction == Reaction RXN-12816 == * direction: ** left-to-right * common-name: ** 8-oxo-dgdp diphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.58 e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN490-3641 ==
+
== Reaction RXN-12816 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** 8-oxo-dgdp diphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.57 ec-1.14.11.57]
+
** [http://enzyme.expasy.org/EC/3.6.1.58 ec-3.6.1.58]
−
* synonymous:
 
−
** proline hydroxylase
 
−
** proline,2-oxoglutarate 4-dioxygenase
 
−
** prolyl 4-hydroxylase
 
−
** prolyl hydroxylase
 
−
** protocollagen hydroxylase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[4-HYDROXY-L-PROLINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[CPD-13853]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12365]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10762]]
+
* Gene: [[SJ06120]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20526]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20511]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51509 51509]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32064 32064]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.14.11.57}}
+
{{#set: common-name=8-oxo-dgdp diphosphatase}}
−
{{#set: synonymous=proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|prolyl 4-hydroxylase|prolyl hydroxylase|protocollagen hydroxylase}}
+
{{#set: ec-number=ec-3.6.1.58}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:21, 15 January 2021

Reaction RXN-12816

  • direction:
    • left-to-right
  • common-name:
    • 8-oxo-dgdp diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ExchangeSeed-NA%2B&oldid=114605"