Difference between revisions of "ExchangeSeed-NA+"

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(Created page with "Category:reaction == Reaction SPHINGOMYELIN-PHOSPHODIESTERASE-RXN == * direction: ** left-to-right * common-name: ** sphingomyelin phosphodiesterase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction ExchangeSeed-NA+ == * direction: ** reversible == Reaction formula == * 1.0 NA+[C-BOUNDARY] '''<=>''' 1.0 NA+[e] == Gene(s) associate...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction SPHINGOMYELIN-PHOSPHODIESTERASE-RXN ==
+
== Reaction ExchangeSeed-NA+ ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** sphingomyelin phosphodiesterase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.1.4.12 ec-3.1.4.12]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Sphingomyelins]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Ceramides]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[NA+]][C-BOUNDARY] '''<=>''' 1.0 [[NA+]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ16608]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ16609]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19254 19254]
+
{{#set: nb gene associated=0}}
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02541 R02541]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P17405 P17405]
 
** [http://www.uniprot.org/uniprot/P11889 P11889]
 
** [http://www.uniprot.org/uniprot/P09599 P09599]
 
** [http://www.uniprot.org/uniprot/P17627 P17627]
 
** [http://www.uniprot.org/uniprot/Q04519 Q04519]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=sphingomyelin phosphodiesterase}}
 
{{#set: ec-number=ec-3.1.4.12}}
 
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=import_from_medium}}

Latest revision as of 11:19, 18 March 2021

Reaction ExchangeSeed-NA+

  • direction:
    • reversible

Reaction formula

  • 1.0 NA+[C-BOUNDARY] <=> 1.0 NA+[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links