Difference between revisions of "ExchangeSeed-NA+"

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(Created page with "Category:reaction == Reaction SPHINGOMYELIN-PHOSPHODIESTERASE-RXN == * direction: ** left-to-right * common-name: ** sphingomyelin phosphodiesterase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction RXN-11797 == * direction: ** left-to-right * common-name: ** (r)-3-hydroxydecanoyl-coa synthase * ec-number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction SPHINGOMYELIN-PHOSPHODIESTERASE-RXN ==
+
== Reaction RXN-11797 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** sphingomyelin phosphodiesterase
+
** (r)-3-hydroxydecanoyl-coa synthase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.1.4.12 ec-3.1.4.12]
+
** [http://enzyme.expasy.org/EC/2.4.1 ec-2.4.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Sphingomyelins]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Ceramides]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CPD-12777]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ16608]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ16609]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6657]], polyhydroxydecanoate biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19254 19254]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02541 R02541]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P17405 P17405]
 
** [http://www.uniprot.org/uniprot/P11889 P11889]
 
** [http://www.uniprot.org/uniprot/P09599 P09599]
 
** [http://www.uniprot.org/uniprot/P17627 P17627]
 
** [http://www.uniprot.org/uniprot/Q04519 Q04519]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=sphingomyelin phosphodiesterase}}
+
{{#set: common-name=(r)-3-hydroxydecanoyl-coa synthase}}
{{#set: ec-number=ec-3.1.4.12}}
+
{{#set: ec-number=ec-2.4.1}}
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=0}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 13:15, 14 January 2021

Reaction RXN-11797

  • direction:
    • left-to-right
  • common-name:
    • (r)-3-hydroxydecanoyl-coa synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6657, polyhydroxydecanoate biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links