Difference between revisions of "ExchangeSeed-PROTON"

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(Created page with "Category:reaction == Reaction RXN-7609 == * direction: ** left-to-right * common-name: ** 5'-nucleotidase ** guanosine-5'-phosphate phosphohydrolase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction ExchangeSeed-PROTON == * direction: ** reversible == Reaction formula == * 1.0 PROTON[C-BOUNDARY] '''<=>''' 1.0 PROTON[e] == Gene(s)...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-7609 ==
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== Reaction ExchangeSeed-PROTON ==
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** 5'-nucleotidase
 
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** guanosine-5'-phosphate phosphohydrolase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[GMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GUANOSINE]][c] '''+''' 1 [[Pi]][c]
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* 1.0 [[PROTON]][C-BOUNDARY] '''<=>''' 1.0 [[PROTON]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ04587]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ18402]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ09030]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ18895]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ15366]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ16098]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6606]], guanosine nucleotides degradation II:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6607]], guanosine nucleotides degradation I:
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6608]], guanosine nucleotides degradation III:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27715 27715]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
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{{#set: reconstruction category=manual}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction tool=curation}}
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{{#set: common-name=guanosine-5'-phosphate phosphohydrolase|5'-nucleotidase}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: ec-number=ec-3.1.3.5}}
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{{#set: reconstruction source=import_from_medium}}
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
 

Latest revision as of 11:18, 18 March 2021

Reaction ExchangeSeed-PROTON

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ExchangeSeed-PROTON&oldid=140109"