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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction TRANSALDOL-RXN == | + | == Reaction ExchangeSeed-THIAMINE == |
| | * direction: | | * direction: |
| | ** reversible | | ** reversible |
| − | * common-name:
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| − | ** transaldolase
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| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]
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| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[FRUCTOSE-6P]][c] | + | * 1.0 [[THIAMINE]][C-BOUNDARY] '''<=>''' 1.0 [[THIAMINE]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ12204]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ18265]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
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| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
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| − | * [[P124-PWY]], Bifidobacterium shunt:
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| − | ** '''12''' reactions found over '''15''' reactions in the full pathway
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| − | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
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| − | ** '''11''' reactions found over '''12''' reactions in the full pathway
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| − | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-5723]], Rubisco shunt:
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| − | ** '''10''' reactions found over '''10''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17056 17056]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P17441 P17441]
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| − | ** [http://www.uniprot.org/uniprot/P17440 P17440]
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| − | ** [http://www.uniprot.org/uniprot/P37837 P37837]
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| − | ** [http://www.uniprot.org/uniprot/P45055 P45055]
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| − | ** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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| − | ** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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| − | ** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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| − | ** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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| − | ** [http://www.uniprot.org/uniprot/P34214 P34214]
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| − | ** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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| − | ** [http://www.uniprot.org/uniprot/P15019 P15019]
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| − | ** [http://www.uniprot.org/uniprot/P53228 P53228]
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| − | ** [http://www.uniprot.org/uniprot/P51778 P51778]
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| − | ** [http://www.uniprot.org/uniprot/P72797 P72797]
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| − | ** [http://www.uniprot.org/uniprot/O04894 O04894]
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| − | ** [http://www.uniprot.org/uniprot/P78865 P78865]
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| − | </div>
| |
| | {{#set: direction=reversible}} | | {{#set: direction=reversible}} |
| − | {{#set: common-name=transaldolase}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-2.2.1.2}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=2}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: nb pathway associated=5}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction category=annotation|orthology}} | + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
