Difference between revisions of "ExchangeSeed-THIAMINE"

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(Created page with "Category:reaction == Reaction RXN-13892 == * direction: ** left-to-right * common-name: ** poriferst-7-enol c-5 desaturase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...")
(Created page with "Category:reaction == Reaction TRANSALDOL-RXN == * direction: ** reversible * common-name: ** transaldolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13892 ==
+
== Reaction TRANSALDOL-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** poriferst-7-enol c-5 desaturase
+
** transaldolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.19.20 ec-1.14.19.20]
+
** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-14901]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-14900]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11625]]
+
* Gene: [[SJ12204]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00834]]
+
* Gene: [[SJ18265]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis:
+
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=poriferst-7-enol c-5 desaturase}}
+
* RHEA:
−
{{#set: ec-number=ec-1.14.19.20}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17056 17056]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P17441 P17441]
 +
** [http://www.uniprot.org/uniprot/P17440 P17440]
 +
** [http://www.uniprot.org/uniprot/P37837 P37837]
 +
** [http://www.uniprot.org/uniprot/P45055 P45055]
 +
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
 +
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
 +
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
 +
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
 +
** [http://www.uniprot.org/uniprot/P34214 P34214]
 +
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
 +
** [http://www.uniprot.org/uniprot/P15019 P15019]
 +
** [http://www.uniprot.org/uniprot/P53228 P53228]
 +
** [http://www.uniprot.org/uniprot/P51778 P51778]
 +
** [http://www.uniprot.org/uniprot/P72797 P72797]
 +
** [http://www.uniprot.org/uniprot/O04894 O04894]
 +
** [http://www.uniprot.org/uniprot/P78865 P78865]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=transaldolase}}
 +
{{#set: ec-number=ec-2.2.1.2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction TRANSALDOL-RXN

  • direction:
    • reversible
  • common-name:
    • transaldolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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