Difference between revisions of "ExchangeSeed-THIAMINE"
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(Created page with "Category:reaction == Reaction RXN-13892 == * direction: ** left-to-right * common-name: ** poriferst-7-enol c-5 desaturase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...") |
(Created page with "Category:reaction == Reaction TRANSALDOL-RXN == * direction: ** reversible * common-name: ** transaldolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction TRANSALDOL-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** transaldolase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[FRUCTOSE-6P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ12204]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ18265]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): |
− | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
+ | * [[P124-PWY]], Bifidobacterium shunt: | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec- | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17056 17056] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P17441 P17441] | ||
+ | ** [http://www.uniprot.org/uniprot/P17440 P17440] | ||
+ | ** [http://www.uniprot.org/uniprot/P37837 P37837] | ||
+ | ** [http://www.uniprot.org/uniprot/P45055 P45055] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A867 P0A867] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58370 Q58370] | ||
+ | ** [http://www.uniprot.org/uniprot/P34214 P34214] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A870 P0A870] | ||
+ | ** [http://www.uniprot.org/uniprot/P15019 P15019] | ||
+ | ** [http://www.uniprot.org/uniprot/P53228 P53228] | ||
+ | ** [http://www.uniprot.org/uniprot/P51778 P51778] | ||
+ | ** [http://www.uniprot.org/uniprot/P72797 P72797] | ||
+ | ** [http://www.uniprot.org/uniprot/O04894 O04894] | ||
+ | ** [http://www.uniprot.org/uniprot/P78865 P78865] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=transaldolase}} | ||
+ | {{#set: ec-number=ec-2.2.1.2}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:14, 14 January 2021
Contents
Reaction TRANSALDOL-RXN
- direction:
- reversible
- common-name:
- transaldolase
- ec-number:
Reaction formula
- 1 D-SEDOHEPTULOSE-7-P[c] + 1 GAP[c] <=> 1 ERYTHROSE-4P[c] + 1 FRUCTOSE-6P[c]
Gene(s) associated with this reaction
- Gene: SJ12204
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ18265
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
- 7 reactions found over 9 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt:
- 12 reactions found over 15 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
- 5 reactions found over 5 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 10 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links