Difference between revisions of "ExchangeSeed-WATER"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] == * direction: ** reversible * common-name: ** fructose bisphosph...")
(Created page with "Category:reaction == Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** trna(m5u54)methyltransferase * ec-number: ** [http://...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] ==
+
== Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** fructose bisphosphate aldolase
+
** trna(m5u54)methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.13 ec-4.1.2.13]
+
** [http://enzyme.expasy.org/EC/2.1.1.35 ec-2.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[GAP]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Uracil-54-in-tRNA]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-containing-5Me-uridine54]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03220]]
−
* Gene: [[SJ12479]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22520]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13560]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17964]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21513]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14732 14732]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42713 42713]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00594 R00594]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7LZE8 Q7LZE8]
+
** [http://www.uniprot.org/uniprot/P23003 P23003]
−
** [http://www.uniprot.org/uniprot/Q7M2K6 Q7M2K6]
+
** [http://www.uniprot.org/uniprot/P31812 P31812]
−
** [http://www.uniprot.org/uniprot/P07764 P07764]
+
** [http://www.uniprot.org/uniprot/Q9PP92 Q9PP92]
−
** [http://www.uniprot.org/uniprot/Q9URB4 Q9URB4]
+
** [http://www.uniprot.org/uniprot/Q9JT82 Q9JT82]
−
** [http://www.uniprot.org/uniprot/P14223 P14223]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q07159 Q07159]
+
{{#set: common-name=trna(m5u54)methyltransferase}}
−
** [http://www.uniprot.org/uniprot/P07752 P07752]
+
{{#set: ec-number=ec-2.1.1.35}}
−
** [http://www.uniprot.org/uniprot/P14540 P14540]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P07341 P07341]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P0AB71 P0AB71]
 
−
** [http://www.uniprot.org/uniprot/P04075 P04075]
 
−
** [http://www.uniprot.org/uniprot/P05062 P05062]
 
−
** [http://www.uniprot.org/uniprot/P09972 P09972]
 
−
** [http://www.uniprot.org/uniprot/P05064 P05064]
 
−
** [http://www.uniprot.org/uniprot/P05063 P05063]
 
−
** [http://www.uniprot.org/uniprot/P22197 P22197]
 
−
** [http://www.uniprot.org/uniprot/P00883 P00883]
 
−
** [http://www.uniprot.org/uniprot/P27995 P27995]
 
−
** [http://www.uniprot.org/uniprot/P05065 P05065]
 
−
** [http://www.uniprot.org/uniprot/P00884 P00884]
 
−
** [http://www.uniprot.org/uniprot/P09117 P09117]
 
−
** [http://www.uniprot.org/uniprot/P17784 P17784]
 
−
** [http://www.uniprot.org/uniprot/P29356 P29356]
 
−
** [http://www.uniprot.org/uniprot/P16096 P16096]
 
−
** [http://www.uniprot.org/uniprot/P08440 P08440]
 
−
** [http://www.uniprot.org/uniprot/P44429 P44429]
 
−
** [http://www.uniprot.org/uniprot/P13243 P13243]
 
−
** [http://www.uniprot.org/uniprot/O51401 O51401]
 
−
** [http://www.uniprot.org/uniprot/P47269 P47269]
 
−
** [http://www.uniprot.org/uniprot/Q9CED4 Q9CED4]
 
−
** [http://www.uniprot.org/uniprot/Q9JW15 Q9JW15]
 
−
** [http://www.uniprot.org/uniprot/Q59100 Q59100]
 
−
** [http://www.uniprot.org/uniprot/Q59101 Q59101]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Z5 Q7M4Z5]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Z4 Q7M4Z4]
 
−
** [http://www.uniprot.org/uniprot/P19537 P19537]
 
−
** [http://www.uniprot.org/uniprot/Q01516 Q01516]
 
−
** [http://www.uniprot.org/uniprot/Q01517 Q01517]
 
−
** [http://www.uniprot.org/uniprot/Q91384 Q91384]
 
−
** [http://www.uniprot.org/uniprot/P52210 P52210]
 
−
** [http://www.uniprot.org/uniprot/Q42690 Q42690]
 
−
** [http://www.uniprot.org/uniprot/P53447 P53447]
 
−
** [http://www.uniprot.org/uniprot/Q7LZE9 Q7LZE9]
 
−
** [http://www.uniprot.org/uniprot/P53818 P53818]
 
−
** [http://www.uniprot.org/uniprot/P46257 P46257]
 
−
** [http://www.uniprot.org/uniprot/P46256 P46256]
 
−
** [http://www.uniprot.org/uniprot/Q42476 Q42476]
 
−
** [http://www.uniprot.org/uniprot/P75089 P75089]
 
−
** [http://www.uniprot.org/uniprot/O22486 O22486]
 
−
** [http://www.uniprot.org/uniprot/Q40677 Q40677]
 
−
** [http://www.uniprot.org/uniprot/O65581 O65581]
 
−
** [http://www.uniprot.org/uniprot/Q9SVJ6 Q9SVJ6]
 
−
** [http://www.uniprot.org/uniprot/P93565 P93565]
 
−
** [http://www.uniprot.org/uniprot/P50923 P50923]
 
−
** [http://www.uniprot.org/uniprot/O04975 O04975]
 
−
** [http://www.uniprot.org/uniprot/P36580 P36580]
 
−
** [http://www.uniprot.org/uniprot/P53444 P53444]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=fructose bisphosphate aldolase}}
 
−
{{#set: ec-number=ec-4.1.2.13}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=13}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:41, 18 December 2020

Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • trna(m5u54)methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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