Difference between revisions of "Exchange BIOMASS"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-DELTA-ISOM-RXN ENOYL-COA-DELTA-ISOM-RXN] == * direction: ** reversible * common-name: **...")
(Created page with "Category:reaction == Reaction Exchange_BIOMASS == * direction: ** left-to-right == Reaction formula == * 1 BIOMASS[e] '''=>''' 1 BIOMASS[C-BOUNDARY] == Gene(s) ass...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-DELTA-ISOM-RXN ENOYL-COA-DELTA-ISOM-RXN] ==
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== Reaction Exchange_BIOMASS ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
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* common-name:
 
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** δ3-cis-δ2-trans-enoyl-coa isomerase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/5.3.3.8 ec-5.3.3.8]
 
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* synonymous:
 
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** probable enoyl-coa hydratase/isomerase
 
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** probable enoyl coa-hydratase/isomerase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CIS-DELTA3-ENOYL-COA]][c] '''<=>''' 1 [[TRANS-D2-ENOYL-COA]][c]
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* 1 [[BIOMASS]][e] '''=>''' 1 [[BIOMASS]][C-BOUNDARY]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ22166]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ07211]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ11169]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5137]], fatty acid &beta;-oxidation III (unsaturated, odd number): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5137 PWY-5137]
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[biomass_reaction]]; tool: [[curation]]; comment: exchange biomass to boundary
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: direction=left-to-right}}
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** [http://www.uniprot.org/uniprot/P21177 P21177]
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{{#set: nb gene associated=0}}
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** [http://www.uniprot.org/uniprot/P42126 P42126]
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{{#set: nb pathway associated=0}}
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** [http://www.uniprot.org/uniprot/P07896 P07896]
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{{#set: reconstruction category=manual}}
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** [http://www.uniprot.org/uniprot/P23965 P23965]
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{{#set: reconstruction tool=curation}}
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** [http://www.uniprot.org/uniprot/Q64592 Q64592]
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{{#set: reconstruction comment=exchange biomass to boundary}}
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** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
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{{#set: reconstruction source=biomass_reaction}}
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** [http://www.uniprot.org/uniprot/P42125 P42125]
 
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** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=&delta;3-cis-&delta;2-trans-enoyl-coa isomerase}}
 
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{{#set: ec-number=ec-5.3.3.8}}
 
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{{#set: synonymous=probable enoyl coa-hydratase/isomerase|probable enoyl-coa hydratase/isomerase}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:21, 18 March 2021

Reaction Exchange_BIOMASS

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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