Difference between revisions of "Exchange BIOMASS"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETPYRKIN-RXN OHMETPYRKIN-RXN] == * direction: ** left-to-right * common-name: ** hydroxymethylpy...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-DELTA-ISOM-RXN ENOYL-COA-DELTA-ISOM-RXN] == * direction: ** reversible * common-name: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETPYRKIN-RXN OHMETPYRKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-DELTA-ISOM-RXN ENOYL-COA-DELTA-ISOM-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** hydroxymethylpyrimidine kinase
+
** δ3-cis-δ2-trans-enoyl-coa isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.49 ec-2.7.1.49]
+
** [http://enzyme.expasy.org/EC/5.3.3.8 ec-5.3.3.8]
 +
* synonymous:
 +
** probable enoyl-coa hydratase/isomerase
 +
** probable enoyl coa-hydratase/isomerase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CIS-DELTA3-ENOYL-COA]][c] '''<=>''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18183]]
+
* Gene: [[SJ22166]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11169]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
+
* [[PWY-5137]], fatty acid &beta;-oxidation III (unsaturated, odd number): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5137 PWY-5137]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23097 23097]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03471 R03471]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O48881 O48881]
+
** [http://www.uniprot.org/uniprot/P21177 P21177]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P42126 P42126]
−
{{#set: common-name=hydroxymethylpyrimidine kinase}}
+
** [http://www.uniprot.org/uniprot/P07896 P07896]
−
{{#set: ec-number=ec-2.7.1.49}}
+
** [http://www.uniprot.org/uniprot/P23965 P23965]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q64592 Q64592]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P42125 P42125]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=&delta;3-cis-&delta;2-trans-enoyl-coa isomerase}}
 +
{{#set: ec-number=ec-5.3.3.8}}
 +
{{#set: synonymous=probable enoyl coa-hydratase/isomerase|probable enoyl-coa hydratase/isomerase}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:28, 26 August 2019

Reaction ENOYL-COA-DELTA-ISOM-RXN

  • direction:
    • reversible
  • common-name:
    • δ3-cis-δ2-trans-enoyl-coa isomerase
  • ec-number:
  • synonymous:
    • probable enoyl-coa hydratase/isomerase
    • probable enoyl coa-hydratase/isomerase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5137, fatty acid β-oxidation III (unsaturated, odd number): PWY-5137
    • 1 reactions found over 1 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






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