Difference between revisions of "F16ALDOLASE-RXN"

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(Created page with "Category:reaction == Reaction GLYCPDIESTER-RXN == * direction: ** left-to-right * common-name: ** glycerophosphoryl diester phosphodiesterase, periplasmic * ec-number: **...")
(Created page with "Category:reaction == Reaction F16ALDOLASE-RXN == * direction: ** reversible * common-name: ** fructose bisphosphate aldolase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
 
(3 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYCPDIESTER-RXN ==
+
== Reaction F16ALDOLASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** glycerophosphoryl diester phosphodiesterase, periplasmic
+
** fructose bisphosphate aldolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.46 ec-3.1.4.46]
+
** [http://enzyme.expasy.org/EC/4.1.2.13 ec-4.1.2.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Glycerophosphodiesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16458]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12479]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00999]]
+
* Gene: [[SJ22520]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13560]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17964]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21513]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6952]], glycerophosphodiester degradation:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR99464
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12970 12970]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14732 14732]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00857 R00857]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q99387 Q99387]
+
** [http://www.uniprot.org/uniprot/Q7LZE8 Q7LZE8]
−
** [http://www.uniprot.org/uniprot/P10908 P10908]
+
** [http://www.uniprot.org/uniprot/Q7M2K6 Q7M2K6]
−
** [http://www.uniprot.org/uniprot/Q06282 Q06282]
+
** [http://www.uniprot.org/uniprot/P07764 P07764]
−
** [http://www.uniprot.org/uniprot/Q9V208 Q9V208]
+
** [http://www.uniprot.org/uniprot/Q9URB4 Q9URB4]
−
** [http://www.uniprot.org/uniprot/P09394 P09394]
+
** [http://www.uniprot.org/uniprot/P14223 P14223]
−
** [http://www.uniprot.org/uniprot/Q9S3K5 Q9S3K5]
+
** [http://www.uniprot.org/uniprot/Q07159 Q07159]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P07752 P07752]
−
{{#set: common-name=glycerophosphoryl diester phosphodiesterase, periplasmic}}
+
** [http://www.uniprot.org/uniprot/P14540 P14540]
−
{{#set: ec-number=ec-3.1.4.46}}
+
** [http://www.uniprot.org/uniprot/P07341 P07341]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/P0AB71 P0AB71]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P04075 P04075]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/P05062 P05062]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/P09972 P09972]
 +
** [http://www.uniprot.org/uniprot/P05064 P05064]
 +
** [http://www.uniprot.org/uniprot/P05063 P05063]
 +
** [http://www.uniprot.org/uniprot/P22197 P22197]
 +
** [http://www.uniprot.org/uniprot/P00883 P00883]
 +
** [http://www.uniprot.org/uniprot/P27995 P27995]
 +
** [http://www.uniprot.org/uniprot/P05065 P05065]
 +
** [http://www.uniprot.org/uniprot/P00884 P00884]
 +
** [http://www.uniprot.org/uniprot/P09117 P09117]
 +
** [http://www.uniprot.org/uniprot/P17784 P17784]
 +
** [http://www.uniprot.org/uniprot/P29356 P29356]
 +
** [http://www.uniprot.org/uniprot/P16096 P16096]
 +
** [http://www.uniprot.org/uniprot/P08440 P08440]
 +
** [http://www.uniprot.org/uniprot/P44429 P44429]
 +
** [http://www.uniprot.org/uniprot/P13243 P13243]
 +
** [http://www.uniprot.org/uniprot/O51401 O51401]
 +
** [http://www.uniprot.org/uniprot/P47269 P47269]
 +
** [http://www.uniprot.org/uniprot/Q9CED4 Q9CED4]
 +
** [http://www.uniprot.org/uniprot/Q9JW15 Q9JW15]
 +
** [http://www.uniprot.org/uniprot/Q59100 Q59100]
 +
** [http://www.uniprot.org/uniprot/Q59101 Q59101]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z5 Q7M4Z5]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z4 Q7M4Z4]
 +
** [http://www.uniprot.org/uniprot/P19537 P19537]
 +
** [http://www.uniprot.org/uniprot/Q01516 Q01516]
 +
** [http://www.uniprot.org/uniprot/Q01517 Q01517]
 +
** [http://www.uniprot.org/uniprot/Q91384 Q91384]
 +
** [http://www.uniprot.org/uniprot/P52210 P52210]
 +
** [http://www.uniprot.org/uniprot/Q42690 Q42690]
 +
** [http://www.uniprot.org/uniprot/P53447 P53447]
 +
** [http://www.uniprot.org/uniprot/Q7LZE9 Q7LZE9]
 +
** [http://www.uniprot.org/uniprot/P53818 P53818]
 +
** [http://www.uniprot.org/uniprot/P46257 P46257]
 +
** [http://www.uniprot.org/uniprot/P46256 P46256]
 +
** [http://www.uniprot.org/uniprot/Q42476 Q42476]
 +
** [http://www.uniprot.org/uniprot/P75089 P75089]
 +
** [http://www.uniprot.org/uniprot/O22486 O22486]
 +
** [http://www.uniprot.org/uniprot/Q40677 Q40677]
 +
** [http://www.uniprot.org/uniprot/O65581 O65581]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ6 Q9SVJ6]
 +
** [http://www.uniprot.org/uniprot/P93565 P93565]
 +
** [http://www.uniprot.org/uniprot/P50923 P50923]
 +
** [http://www.uniprot.org/uniprot/O04975 O04975]
 +
** [http://www.uniprot.org/uniprot/P36580 P36580]
 +
** [http://www.uniprot.org/uniprot/P53444 P53444]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=fructose bisphosphate aldolase}}
 +
{{#set: ec-number=ec-4.1.2.13}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=13}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction F16ALDOLASE-RXN

  • direction:
    • reversible
  • common-name:
    • fructose bisphosphate aldolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered):
    • 7 reactions found over 9 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus):
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1042, glycolysis IV:
    • 9 reactions found over 10 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
    • 6 reactions found over 7 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=F16ALDOLASE-RXN&oldid=140196"