Difference between revisions of "F16BDEPHOS-RXN"

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(Created page with "Category:reaction == Reaction RXN-14025 == * direction: ** left-to-right * common-name: ** ump phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction F16BDEPHOS-RXN == * direction: ** left-to-right * common-name: ** fructose-1,6-bisphosphatase ** fructose 1,6-bisphosphate 1-phosphatase * ec...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14025 ==
+
== Reaction F16BDEPHOS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ump phosphatase
+
** fructose-1,6-bisphosphatase
−
** 5'-nucleotidase
+
** fructose 1,6-bisphosphate 1-phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/3.1.3.11 ec-3.1.3.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[UMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c]
+
* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ15366]]
+
* Gene: [[SJ17320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13518]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18895]]
+
* Gene: [[SJ14821]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16098]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10463]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20807]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09030]]
+
* Gene: [[SJ14175]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18402]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16950]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7821]], tunicamycin biosynthesis:
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7185]], UTP and CTP dephosphorylation I:
+
* [[GLUCONEO-PWY]], gluconeogenesis I:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR96239
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29360 29360]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11065 11065]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P09199 P09199]
 +
** [http://www.uniprot.org/uniprot/P19112 P19112]
 +
** [http://www.uniprot.org/uniprot/P22780 P22780]
 +
** [http://www.uniprot.org/uniprot/P09467 P09467]
 +
** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
 +
** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
 +
** [http://www.uniprot.org/uniprot/P09202 P09202]
 +
** [http://www.uniprot.org/uniprot/Q45597 Q45597]
 +
** [http://www.uniprot.org/uniprot/P45292 P45292]
 +
** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
 +
** [http://www.uniprot.org/uniprot/P19912 P19912]
 +
** [http://www.uniprot.org/uniprot/P19911 P19911]
 +
** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
 +
** [http://www.uniprot.org/uniprot/P09201 P09201]
 +
** [http://www.uniprot.org/uniprot/P0A993 P0A993]
 +
** [http://www.uniprot.org/uniprot/P00636 P00636]
 +
** [http://www.uniprot.org/uniprot/P23014 P23014]
 +
** [http://www.uniprot.org/uniprot/P27994 P27994]
 +
** [http://www.uniprot.org/uniprot/P14766 P14766]
 +
** [http://www.uniprot.org/uniprot/P09195 P09195]
 +
** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
 +
** [http://www.uniprot.org/uniprot/P25851 P25851]
 +
** [http://www.uniprot.org/uniprot/Q05079 Q05079]
 +
** [http://www.uniprot.org/uniprot/P46275 P46275]
 +
** [http://www.uniprot.org/uniprot/P46276 P46276]
 +
** [http://www.uniprot.org/uniprot/Q43139 Q43139]
 +
** [http://www.uniprot.org/uniprot/P00637 P00637]
 +
** [http://www.uniprot.org/uniprot/O65827 O65827]
 +
** [http://www.uniprot.org/uniprot/Q42796 Q42796]
 +
** [http://www.uniprot.org/uniprot/P46267 P46267]
 +
** [http://www.uniprot.org/uniprot/Q07204 Q07204]
 +
** [http://www.uniprot.org/uniprot/P22418 P22418]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5'-nucleotidase|ump phosphatase}}
+
{{#set: common-name=fructose 1,6-bisphosphate 1-phosphatase|fructose-1,6-bisphosphatase}}
−
{{#set: ec-number=ec-3.1.3.5}}
+
{{#set: ec-number=ec-3.1.3.11}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction F16BDEPHOS-RXN

  • direction:
    • left-to-right
  • common-name:
    • fructose-1,6-bisphosphatase
    • fructose 1,6-bisphosphate 1-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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