Difference between revisions of "F16BDEPHOS-RXN"
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(Created page with "Category:reaction == Reaction RXN-14264 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8.4 ec-1.3.8.4] == Reaction formula == * 1 FAD[c...") |
(Created page with "Category:reaction == Reaction F16BDEPHOS-RXN == * direction: ** left-to-right * common-name: ** fructose-1,6-bisphosphatase ** fructose 1,6-bisphosphate 1-phosphatase * ec...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction F16BDEPHOS-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
+ | * common-name: | ||
+ | ** fructose-1,6-bisphosphatase | ||
+ | ** fructose 1,6-bisphosphate 1-phosphatase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.3. | + | ** [http://enzyme.expasy.org/EC/3.1.3.11 ec-3.1.3.11] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ17320]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13518]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ14821]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10463]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ20807]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ14175]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ16950]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY66-399]], gluconeogenesis III: | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: ec-number=ec-1.3. | + | * METANETX-RXN : MNXR96239 |
− | {{#set: nb gene associated= | + | * RHEA: |
− | {{#set: nb pathway associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11065 11065] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P09199 P09199] | ||
+ | ** [http://www.uniprot.org/uniprot/P19112 P19112] | ||
+ | ** [http://www.uniprot.org/uniprot/P22780 P22780] | ||
+ | ** [http://www.uniprot.org/uniprot/P09467 P09467] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9] | ||
+ | ** [http://www.uniprot.org/uniprot/P09202 P09202] | ||
+ | ** [http://www.uniprot.org/uniprot/Q45597 Q45597] | ||
+ | ** [http://www.uniprot.org/uniprot/P45292 P45292] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83] | ||
+ | ** [http://www.uniprot.org/uniprot/P19912 P19912] | ||
+ | ** [http://www.uniprot.org/uniprot/P19911 P19911] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4] | ||
+ | ** [http://www.uniprot.org/uniprot/P09201 P09201] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A993 P0A993] | ||
+ | ** [http://www.uniprot.org/uniprot/P00636 P00636] | ||
+ | ** [http://www.uniprot.org/uniprot/P23014 P23014] | ||
+ | ** [http://www.uniprot.org/uniprot/P27994 P27994] | ||
+ | ** [http://www.uniprot.org/uniprot/P14766 P14766] | ||
+ | ** [http://www.uniprot.org/uniprot/P09195 P09195] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7] | ||
+ | ** [http://www.uniprot.org/uniprot/P25851 P25851] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05079 Q05079] | ||
+ | ** [http://www.uniprot.org/uniprot/P46275 P46275] | ||
+ | ** [http://www.uniprot.org/uniprot/P46276 P46276] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43139 Q43139] | ||
+ | ** [http://www.uniprot.org/uniprot/P00637 P00637] | ||
+ | ** [http://www.uniprot.org/uniprot/O65827 O65827] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42796 Q42796] | ||
+ | ** [http://www.uniprot.org/uniprot/P46267 P46267] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07204 Q07204] | ||
+ | ** [http://www.uniprot.org/uniprot/P22418 P22418] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=fructose 1,6-bisphosphate 1-phosphatase|fructose-1,6-bisphosphatase}} | ||
+ | {{#set: ec-number=ec-3.1.3.11}} | ||
+ | {{#set: nb gene associated=7}} | ||
+ | {{#set: nb pathway associated=7}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction F16BDEPHOS-RXN
- direction:
- left-to-right
- common-name:
- fructose-1,6-bisphosphatase
- fructose 1,6-bisphosphate 1-phosphatase
- ec-number:
Reaction formula
- 1 FRUCTOSE-16-DIPHOSPHATE[c] + 1 WATER[c] => 1 FRUCTOSE-6P[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ17320
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13518
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ14821
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ10463
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ20807
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ14175
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16950
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
- GLUCONEO-PWY, gluconeogenesis I:
- 12 reactions found over 13 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate):
- 10 reactions found over 11 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
- 11 reactions found over 12 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
- PWY66-399, gluconeogenesis III:
- 11 reactions found over 12 reactions in the full pathway
- SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
- 6 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links