Difference between revisions of "FACOAE18111Z"

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(Created page with "Category:reaction == Reaction RXN-12002 == * direction: ** left-to-right * common-name: ** ump kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.22 ec-2.7.4.22] **...")
(Created page with "Category:reaction == Reaction ExchangeSeed-CO+2 == * direction: ** reversible == Reaction formula == * 1.0 CO+2[C-BOUNDARY] '''<=>''' 1.0 CO+2[e] == Gene(s) associ...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12002 ==
+
== Reaction ExchangeSeed-CO+2 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** ump kinase
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.7.4.22 ec-2.7.4.22]
 
−
** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[UDP]][c]
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* 1.0 [[CO+2]][C-BOUNDARY] '''<=>''' 1.0 [[CO+2]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ09366]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20076]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ01032]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ06433]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21191]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08159]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ21967]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21099]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7176]], UTP and CTP de novo biosynthesis:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24401 24401]
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{{#set: nb gene associated=0}}
−
* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
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{{#set: reconstruction category=manual}}
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{{#set: direction=left-to-right}}
+
{{#set: reconstruction tool=curation}}
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{{#set: common-name=ump kinase}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: ec-number=ec-2.7.4.14|ec-2.7.4.22}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: nb gene associated=8}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 19:02, 14 January 2021

Reaction ExchangeSeed-CO+2

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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