Difference between revisions of "FADSYN-RXN"

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(Created page with "Category:reaction == Reaction 1.1.1.145-RXN == * direction: ** reversible * common-name: ** 3-beta-hydroxy-delta5-steroid dehydrogenase * ec-number: ** [http://enzyme.expa...")
(Created page with "Category:reaction == Reaction H2PTERIDINEPYROPHOSPHOKIN-RXN == * direction: ** left-to-right * common-name: ** 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase * ec-num...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.145-RXN ==
+
== Reaction H2PTERIDINEPYROPHOSPHOKIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-beta-hydroxy-delta5-steroid dehydrogenase
+
** 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.145 ec-1.1.1.145]
+
** [http://enzyme.expasy.org/EC/2.7.6.3 ec-2.7.6.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3b-hydroxy-D5-steroids]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-oxo-D5-steroids]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DIHYDROPTERIN-CH2OH-PP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ22398]]
−
* Gene: [[SJ21137]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01092]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10476]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04385]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03340]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21834]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21018]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03341]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06332]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ08509]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19806]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02713]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16241]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10400]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17700]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (Methanocaldococcus):
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7853]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis V (Pyrococcus):
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR100694
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24079 24079]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11413 11413]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03176 R03176]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03503 R03503]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27364 P27364]
+
** [http://www.uniprot.org/uniprot/P22291 P22291]
−
** [http://www.uniprot.org/uniprot/Q62878 Q62878]
+
** [http://www.uniprot.org/uniprot/P26281 P26281]
−
** [http://www.uniprot.org/uniprot/Q61767 Q61767]
+
** [http://www.uniprot.org/uniprot/O84619 O84619]
−
** [http://www.uniprot.org/uniprot/P27365 P27365]
+
** [http://www.uniprot.org/uniprot/Q9ZM35 Q9ZM35]
−
** [http://www.uniprot.org/uniprot/Q61694 Q61694]
+
** [http://www.uniprot.org/uniprot/Q9RXY4 Q9RXY4]
−
** [http://www.uniprot.org/uniprot/P14893 P14893]
+
** [http://www.uniprot.org/uniprot/O66550 O66550]
−
** [http://www.uniprot.org/uniprot/P26439 P26439]
+
** [http://www.uniprot.org/uniprot/O25680 O25680]
−
** [http://www.uniprot.org/uniprot/P14060 P14060]
+
** [http://www.uniprot.org/uniprot/Q9PJ54 Q9PJ54]
−
** [http://www.uniprot.org/uniprot/P22071 P22071]
+
** [http://www.uniprot.org/uniprot/Q9JV81 Q9JV81]
−
** [http://www.uniprot.org/uniprot/P22072 P22072]
+
** [http://www.uniprot.org/uniprot/P64143 P64143]
−
** [http://www.uniprot.org/uniprot/P24815 P24815]
+
** [http://www.uniprot.org/uniprot/Q9Z7E8 Q9Z7E8]
−
** [http://www.uniprot.org/uniprot/Q91997 Q91997]
+
** [http://www.uniprot.org/uniprot/P82602 P82602]
−
** [http://www.uniprot.org/uniprot/Q67477 Q67477]
+
** [http://www.uniprot.org/uniprot/P29252 P29252]
−
** [http://www.uniprot.org/uniprot/Q91381 Q91381]
+
** [http://www.uniprot.org/uniprot/P72736 P72736]
−
** [http://www.uniprot.org/uniprot/Q98318 Q98318]
+
** [http://www.uniprot.org/uniprot/O04862 O04862]
−
** [http://www.uniprot.org/uniprot/P21097 P21097]
+
** [http://www.uniprot.org/uniprot/Q9SZV3 Q9SZV3]
−
** [http://www.uniprot.org/uniprot/P26670 P26670]
+
** [http://www.uniprot.org/uniprot/Q9X8I1 Q9X8I1]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-beta-hydroxy-delta5-steroid dehydrogenase}}
+
{{#set: common-name=6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase}}
−
{{#set: ec-number=ec-1.1.1.145}}
+
{{#set: ec-number=ec-2.7.6.3}}
−
{{#set: nb gene associated=19}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction H2PTERIDINEPYROPHOSPHOKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6797, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (Methanocaldococcus):
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7853, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis V (Pyrococcus):
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7852, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6147, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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