Difference between revisions of "FADSYN-RXN"
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(Created page with "Category:reaction == Reaction RXN-14274 == * direction: ** reversible * common-name: ** decanoyl-coa c-acyltransferase ** acetyl-coa c-acyltransferase * ec-number: ** [htt...") |
(Created page with "Category:reaction == Reaction DIHYDROXYISOVALDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** 2,3-dihydroxy-isovalerate dehydratase * ec-number: ** [http://...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction DIHYDROXYISOVALDEHYDRAT-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** 2,3-dihydroxy-isovalerate dehydratase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2 | + | ** [http://enzyme.expasy.org/EC/4.2.1.9 ec-4.2.1.9] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ19719]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[VALSYN-PWY]], L-valine biosynthesis: | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
Line 37: | Line 27: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24810 24810] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P55186 P55186] |
− | {{#set: ec-number=ec-2 | + | ** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P05791 P05791] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03] |
+ | ** [http://www.uniprot.org/uniprot/P44851 P44851] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02139 Q02139] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98] | ||
+ | ** [http://www.uniprot.org/uniprot/P39522 P39522] | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=2,3-dihydroxy-isovalerate dehydratase}} | ||
+ | {{#set: ec-number=ec-4.2.1.9}} | ||
+ | {{#set: nb gene associated=1}} | ||
+ | {{#set: nb pathway associated=2}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:18, 14 January 2021
Contents
Reaction DIHYDROXYISOVALDEHYDRAT-RXN
- direction:
- left-to-right
- common-name:
- 2,3-dihydroxy-isovalerate dehydratase
- ec-number:
Reaction formula
- 1 CPD-13357[c] => 1 2-KETO-ISOVALERATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ19719
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- VALSYN-PWY, L-valine biosynthesis:
- 4 reactions found over 4 reactions in the full pathway
- PWY-7111, pyruvate fermentation to isobutanol (engineered):
- 4 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links