Difference between revisions of "FARNESYLTRANSTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction OHACYL-COA-DEHYDROG-RXN == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction FARNESYLTRANSTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** farnesyltranstransferase ** geranylgeranyl diphosphate syntha...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OHACYL-COA-DEHYDROG-RXN ==
+
== Reaction FARNESYLTRANSTRANSFERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxyacyl-coa dehydrogenase
+
** farnesyltranstransferase
 +
** geranylgeranyl diphosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ17348]]
+
* Gene: [[SJ13532]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ10781]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ01444]]
+
* Gene: [[SJ17982]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20033]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16180]]
+
* Gene: [[SJ02885]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ07211]]
+
* Gene: [[SJ10346]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
+
* [[PWY-7492]], paspaline biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
+
* [[PWY-6659]], fusicoccin A biosynthesis:
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
+
* [[PWY-7517]], brassicicene C biosynthesis:
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
+
* [[PWY-6691]], plaunotol biosynthesis:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]], stellatic acid biosynthesis:
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7720]], ophiobolin F biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR99650
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22433 22433]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17654 17654]
−
* PIR:
+
* LIGAND-RXN:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21177 P21177]
+
** [http://www.uniprot.org/uniprot/P39464 P39464]
−
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
+
** [http://www.uniprot.org/uniprot/P24322 P24322]
−
** [http://www.uniprot.org/uniprot/Q53924 Q53924]
+
** [http://www.uniprot.org/uniprot/P80042 P80042]
−
** [http://www.uniprot.org/uniprot/P07896 P07896]
+
** [http://www.uniprot.org/uniprot/Q12051 Q12051]
−
** [http://www.uniprot.org/uniprot/Q61425 Q61425]
+
** [http://www.uniprot.org/uniprot/P95999 P95999]
−
** [http://www.uniprot.org/uniprot/Q16836 Q16836]
+
** [http://www.uniprot.org/uniprot/P48368 P48368]
−
** [http://www.uniprot.org/uniprot/P28793 P28793]
+
** [http://www.uniprot.org/uniprot/P93227 P93227]
−
** [http://www.uniprot.org/uniprot/P22414 P22414]
+
** [http://www.uniprot.org/uniprot/P93228 P93228]
−
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
+
** [http://www.uniprot.org/uniprot/Q42698 Q42698]
−
** [http://www.uniprot.org/uniprot/P34439 P34439]
+
** [http://www.uniprot.org/uniprot/Q43133 Q43133]
−
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
+
** [http://www.uniprot.org/uniprot/Q42866 Q42866]
−
** [http://www.uniprot.org/uniprot/P55100 P55100]
+
** [http://www.uniprot.org/uniprot/P54976 P54976]
−
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 
−
** [http://www.uniprot.org/uniprot/P00348 P00348]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
+
{{#set: common-name=geranylgeranyl diphosphate synthase|farnesyltranstransferase}}
−
{{#set: ec-number=ec-1.1.1.35}}
+
{{#set: ec-number=ec-2.5.1.29}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=8}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction FARNESYLTRANSTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • farnesyltranstransferase
    • geranylgeranyl diphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7492, paspaline biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659, fusicoccin A biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7517, brassicicene C biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6691, plaunotol biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis:
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5120, geranylgeranyl diphosphate biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7720, ophiobolin F biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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