Difference between revisions of "FATTY-ACID-PEROXIDASE-RXN"

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(Created page with "Category:reaction == Reaction GLYCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** glycine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction FATTY-ACID-PEROXIDASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.11.1.3 ec-1.11.1.3] == Reaction for...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYCINE--TRNA-LIGASE-RXN ==
+
== Reaction FATTY-ACID-PEROXIDASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** glycine-trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.14 ec-6.1.1.14]
+
** [http://enzyme.expasy.org/EC/1.11.1.3 ec-1.11.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 2 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-388]][c] '''+''' 3 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16976]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04580]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16484]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR107133
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16014 16014]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23960 23960]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01703 R01703]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P41250 P41250]
 
−
** [http://www.uniprot.org/uniprot/P54380 P54380]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
 
−
** [http://www.uniprot.org/uniprot/P43822 P43822]
 
−
** [http://www.uniprot.org/uniprot/P54381 P54381]
 
−
** [http://www.uniprot.org/uniprot/O51344 O51344]
 
−
** [http://www.uniprot.org/uniprot/Q46371 Q46371]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
 
−
** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
 
−
** [http://www.uniprot.org/uniprot/P43821 P43821]
 
−
** [http://www.uniprot.org/uniprot/O83678 O83678]
 
−
** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
 
−
** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
 
−
** [http://www.uniprot.org/uniprot/P56454 P56454]
 
−
** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
 
−
** [http://www.uniprot.org/uniprot/Q57681 Q57681]
 
−
** [http://www.uniprot.org/uniprot/P67029 P67029]
 
−
** [http://www.uniprot.org/uniprot/O67081 O67081]
 
−
** [http://www.uniprot.org/uniprot/O67898 O67898]
 
−
** [http://www.uniprot.org/uniprot/O59235 O59235]
 
−
** [http://www.uniprot.org/uniprot/P47493 P47493]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
 
−
** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
 
−
** [http://www.uniprot.org/uniprot/P56453 P56453]
 
−
** [http://www.uniprot.org/uniprot/O27874 O27874]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
 
−
** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
 
−
** [http://www.uniprot.org/uniprot/P38088 P38088]
 
−
** [http://www.uniprot.org/uniprot/Q06817 Q06817]
 
−
** [http://www.uniprot.org/uniprot/Q51114 Q51114]
 
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** [http://www.uniprot.org/uniprot/P75425 P75425]
 
−
** [http://www.uniprot.org/uniprot/Q55716 Q55716]
 
−
** [http://www.uniprot.org/uniprot/P00960 P00960]
 
−
** [http://www.uniprot.org/uniprot/P00961 P00961]
 
−
** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycine-trna ligase}}
+
{{#set: ec-number=ec-1.11.1.3}}
−
{{#set: ec-number=ec-6.1.1.14}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:24, 18 March 2021

Reaction FATTY-ACID-PEROXIDASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR107133
  • RHEA:
  • LIGAND-RXN:





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