Difference between revisions of "FATTY-ACID-PEROXIDASE-RXN"

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(Created page with "Category:reaction == Reaction GLYOHMETRANS-RXN == * direction: ** reversible * common-name: ** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase * ec-number:...")
(Created page with "Category:reaction == Reaction 3.2.1.8-RXN == * direction: ** left-to-right * common-name: ** endo-1,4-beta-xylanase ** endo-1,4-β-xylanase * ec-number: ** [http://enz...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYOHMETRANS-RXN ==
+
== Reaction 3.2.1.8-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
+
** endo-1,4-beta-xylanase
 +
** endo-1,4-β-xylanase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
+
** [http://enzyme.expasy.org/EC/3.2.1.8 ec-3.2.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[1-4-beta-Xylan]][c] '''+''' n [[WATER]][c] '''=>''' n [[1-4-D-xylooligosaccharides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03668]]
+
* Gene: [[SJ06513]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15530]]
+
* Gene: [[SJ10590]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6784]], cellulose and hemicellulose degradation (cellulolosome):
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[PWY-181]], photorespiration:
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3661]], glycine betaine degradation I:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYSYN-PWY]], glycine biosynthesis I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-2161]], folate polyglutamylation:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35623 P35623]
+
** [http://www.uniprot.org/uniprot/P10478 P10478]
−
** [http://www.uniprot.org/uniprot/P34898 P34898]
+
** [http://www.uniprot.org/uniprot/Q9R5M7 Q9R5M7]
−
** [http://www.uniprot.org/uniprot/P34899 P34899]
+
** [http://www.uniprot.org/uniprot/Q7M519 Q7M519]
−
** [http://www.uniprot.org/uniprot/P34896 P34896]
+
** [http://www.uniprot.org/uniprot/Q7M520 Q7M520]
−
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
+
** [http://www.uniprot.org/uniprot/P35809 P35809]
−
** [http://www.uniprot.org/uniprot/P34897 P34897]
+
** [http://www.uniprot.org/uniprot/Q7M513 Q7M513]
−
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
+
** [http://www.uniprot.org/uniprot/Q7M0W8 Q7M0W8]
−
** [http://www.uniprot.org/uniprot/O23254 O23254]
+
** [http://www.uniprot.org/uniprot/P23556 P23556]
−
** [http://www.uniprot.org/uniprot/O53441 O53441]
+
** [http://www.uniprot.org/uniprot/Q7M4V8 Q7M4V8]
−
** [http://www.uniprot.org/uniprot/O08370 O08370]
+
** [http://www.uniprot.org/uniprot/Q9R5M6 Q9R5M6]
−
** [http://www.uniprot.org/uniprot/P43844 P43844]
+
** [http://www.uniprot.org/uniprot/Q7M0X0 Q7M0X0]
−
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
+
** [http://www.uniprot.org/uniprot/Q7M0W9 Q7M0W9]
−
** [http://www.uniprot.org/uniprot/O66776 O66776]
+
** [http://www.uniprot.org/uniprot/P45703 P45703]
−
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
+
** [http://www.uniprot.org/uniprot/P18429 P18429]
−
** [http://www.uniprot.org/uniprot/P47634 P47634]
+
** [http://www.uniprot.org/uniprot/P40943 P40943]
−
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
+
** [http://www.uniprot.org/uniprot/P54865 P54865]
−
** [http://www.uniprot.org/uniprot/P56089 P56089]
+
** [http://www.uniprot.org/uniprot/Q00177 Q00177]
−
** [http://www.uniprot.org/uniprot/O53615 O53615]
+
** [http://www.uniprot.org/uniprot/P79046 P79046]
−
** [http://www.uniprot.org/uniprot/O83349 O83349]
+
** [http://www.uniprot.org/uniprot/O83007 O83007]
−
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
+
** [http://www.uniprot.org/uniprot/Q9UUQ2 Q9UUQ2]
−
** [http://www.uniprot.org/uniprot/O51547 O51547]
+
** [http://www.uniprot.org/uniprot/Q9HFA4 Q9HFA4]
−
** [http://www.uniprot.org/uniprot/O84439 O84439]
+
** [http://www.uniprot.org/uniprot/Q9F1V3 Q9F1V3]
−
** [http://www.uniprot.org/uniprot/P24531 P24531]
+
** [http://www.uniprot.org/uniprot/Q9AJR9 Q9AJR9]
−
** [http://www.uniprot.org/uniprot/P39148 P39148]
+
** [http://www.uniprot.org/uniprot/P29417 P29417]
−
** [http://www.uniprot.org/uniprot/P24060 P24060]
+
** [http://www.uniprot.org/uniprot/P26514 P26514]
−
** [http://www.uniprot.org/uniprot/P37292 P37292]
+
** [http://www.uniprot.org/uniprot/P26220 P26220]
−
** [http://www.uniprot.org/uniprot/P34895 P34895]
+
** [http://www.uniprot.org/uniprot/Q9R5P8 Q9R5P8]
−
** [http://www.uniprot.org/uniprot/P34894 P34894]
+
** [http://www.uniprot.org/uniprot/Q9R5P9 Q9R5P9]
−
** [http://www.uniprot.org/uniprot/P49357 P49357]
+
** [http://www.uniprot.org/uniprot/P09850 P09850]
−
** [http://www.uniprot.org/uniprot/P49358 P49358]
+
** [http://www.uniprot.org/uniprot/P14768 P14768]
−
** [http://www.uniprot.org/uniprot/P50433 P50433]
+
** [http://www.uniprot.org/uniprot/P45796 P45796]
−
** [http://www.uniprot.org/uniprot/P37291 P37291]
+
** [http://www.uniprot.org/uniprot/P29126 P29126]
−
** [http://www.uniprot.org/uniprot/P78011 P78011]
+
** [http://www.uniprot.org/uniprot/P29127 P29127]
−
** [http://www.uniprot.org/uniprot/P77962 P77962]
+
** [http://www.uniprot.org/uniprot/Q02244 Q02244]
−
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
+
** [http://www.uniprot.org/uniprot/P40944 P40944]
−
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
+
** [http://www.uniprot.org/uniprot/P55334 P55334]
−
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
+
** [http://www.uniprot.org/uniprot/Q56013 Q56013]
−
** [http://www.uniprot.org/uniprot/O23984 O23984]
+
** [http://www.uniprot.org/uniprot/Q59256 Q59256]
−
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
+
** [http://www.uniprot.org/uniprot/P55328 P55328]
−
** [http://www.uniprot.org/uniprot/P07511 P07511]
+
** [http://www.uniprot.org/uniprot/Q01426 Q01426]
 +
** [http://www.uniprot.org/uniprot/P55331 P55331]
 +
** [http://www.uniprot.org/uniprot/Q59257 Q59257]
 +
** [http://www.uniprot.org/uniprot/P51584 P51584]
 +
** [http://www.uniprot.org/uniprot/P49942 P49942]
 +
** [http://www.uniprot.org/uniprot/P55333 P55333]
 +
** [http://www.uniprot.org/uniprot/P55332 P55332]
 +
** [http://www.uniprot.org/uniprot/Q59790 Q59790]
 +
** [http://www.uniprot.org/uniprot/Q59300 Q59300]
 +
** [http://www.uniprot.org/uniprot/Q59301 Q59301]
 +
** [http://www.uniprot.org/uniprot/Q59674 Q59674]
 +
** [http://www.uniprot.org/uniprot/Q59675 Q59675]
 +
** [http://www.uniprot.org/uniprot/Q60037 Q60037]
 +
** [http://www.uniprot.org/uniprot/Q12579 Q12579]
 +
** [http://www.uniprot.org/uniprot/Q12580 Q12580]
 +
** [http://www.uniprot.org/uniprot/Q60046 Q60046]
 +
** [http://www.uniprot.org/uniprot/P93185 P93185]
 +
** [http://www.uniprot.org/uniprot/P93186 P93186]
 +
** [http://www.uniprot.org/uniprot/P93187 P93187]
 +
** [http://www.uniprot.org/uniprot/Q12603 Q12603]
 +
** [http://www.uniprot.org/uniprot/O69230 O69230]
 +
** [http://www.uniprot.org/uniprot/O30426 O30426]
 +
** [http://www.uniprot.org/uniprot/O52373 O52373]
 +
** [http://www.uniprot.org/uniprot/Q59278 Q59278]
 +
** [http://www.uniprot.org/uniprot/Q9RKN6 Q9RKN6]
 +
** [http://www.uniprot.org/uniprot/P00694 P00694]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
+
{{#set: common-name=endo-1,4-&beta;-xylanase|endo-1,4-beta-xylanase}}
−
{{#set: ec-number=ec-2.1.2.1}}
+
{{#set: ec-number=ec-3.2.1.8}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:37, 5 January 2021

Reaction 3.2.1.8-RXN

  • direction:
    • left-to-right
  • common-name:
    • endo-1,4-beta-xylanase
    • endo-1,4-β-xylanase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6784, cellulose and hemicellulose degradation (cellulolosome):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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