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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction RXN-11662 == | + | == Reaction ALCD19 == |
| | * direction: | | * direction: |
| | ** reversible | | ** reversible |
| | * common-name: | | * common-name: |
| − | ** (s)-3-hydroxybutanoyl-coa dehydrogeanse | + | ** alcohol dehydrogenase (glycerol, nad) |
| − | ** 3-hydroxyacyl-coa dehydrogenase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[NAD]][c] '''+''' 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] | + | * 1.0 [[GLYCERALD]][c] '''+''' 1.0 [[NADH]][c] '''+''' 1.0 [[PROTON]][c] '''<=>''' 1.0 [[GLYCEROL]][c] '''+''' 1.0 [[NAD]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * Gene: [[SJ05644]] |
| − | * Gene: [[SJ21390]] | |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ17348]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ16470]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ16180]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ03584]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ06127]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ07211]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ01444]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * [[PWY-5177]], glutaryl-CoA degradation:
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-7778]], 2-methylpropene degradation:
| |
| − | ** '''3''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
| |
| − | ** '''9''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
| |
| − | ** '''5''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-6583]], pyruvate fermentation to butanol I:
| |
| − | ** '''6''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
| |
| − | ** '''8''' reactions found over '''18''' reactions in the full pathway
| |
| − | * [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
| |
| − | ** '''7''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered):
| |
| − | ** '''3''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
| |
| − | ** '''6''' reactions found over '''15''' reactions in the full pathway
| |
| − | * [[PWY-7779]], methyl tert-butyl ether degradation:
| |
| − | ** '''2''' reactions found over '''10''' reactions in the full pathway
| |
| − | </div>
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30802 30802]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01975 R01975]
| |
| | {{#set: direction=reversible}} | | {{#set: direction=reversible}} |
| − | {{#set: common-name=3-hydroxyacyl-coa dehydrogenase|(s)-3-hydroxybutanoyl-coa dehydrogeanse}} | + | {{#set: common-name=alcohol dehydrogenase (glycerol, nad)}} |
| − | {{#set: ec-number=ec-1.1.1.35}}
| + | {{#set: nb gene associated=1}} |
| − | {{#set: nb gene associated=8}} | + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb pathway associated=11}} | + | {{#set: reconstruction category=orthology}} |
| − | {{#set: reconstruction category=annotation|orthology}} | + | {{#set: reconstruction tool=pantograph}} |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| | {{#set: reconstruction comment=n.a}} | | {{#set: reconstruction comment=n.a}} |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} |
