Difference between revisions of "FBA"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16637 RXN-16637] == * direction: ** left-to-right * common-name: ** aminoacyl-trna hydrolase *...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-RXN ETHYL-RXN] == * direction: ** left-to-right * common-name: ** 1-aminocyclopropane-1-carbo...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16637 RXN-16637] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-RXN ETHYL-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** aminoacyl-trna hydrolase
+
** 1-aminocyclopropane-1-carboxylate oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.29 ec-3.1.1.29]
+
** [http://enzyme.expasy.org/EC/1.14.17.4 ec-1.14.17.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ASCORBATE]][c] '''+''' 1 [[CPD-68]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ETHYLENE-CMPD]][c] '''+''' 1 [[HCN]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ02811]]
−
* Gene: [[SJ00680]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03879]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05960]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02121]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09079]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6308]], L-cysteine biosynthesis II (tRNA-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6308 PWY-6308]
+
* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23641 23641]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07214 R07214]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aminoacyl-trna hydrolase}}
+
{{#set: common-name=1-aminocyclopropane-1-carboxylate oxidase}}
−
{{#set: ec-number=ec-3.1.1.29}}
+
{{#set: ec-number=ec-1.14.17.4}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction ETHYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-aminocyclopropane-1-carboxylate oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ETHYL-PWY, ethylene biosynthesis I (plants): ETHYL-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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