Difference between revisions of "FBA"

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(Created page with "Category:reaction == Reaction GDPPYPHOSKIN-RXN == * direction: ** left-to-right * common-name: ** gdp pyrophosphokinase ** gtp diphosphokinase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction FBA_ == * direction: ** reversible * common-name: ** fructose-bisphosphate aldolase cytosolic == Reaction formula == * 1.0 FRUCTOSE-16-DIPH...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction GDPPYPHOSKIN-RXN ==
+
== Reaction FBA_ ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** gdp pyrophosphokinase
+
** fructose-bisphosphate aldolase cytosolic
** gtp diphosphokinase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.7.6.5 ec-2.7.6.5]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GUANOSINE-5DP-3DP]][c]
+
* 1.0 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1.0 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1.0 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ13961]]
+
* Gene: [[SJ12479]]
** Category: [[annotation]]
+
** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ10100]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ07200]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ14690]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PPGPPMET-PWY]], ppGpp metabolism:
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR100088
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{{#set: direction=reversible}}
* RHEA:
+
{{#set: common-name=fructose-bisphosphate aldolase cytosolic}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28099 28099]
+
{{#set: nb gene associated=1}}
{{#set: direction=left-to-right}}
+
{{#set: nb pathway associated=0}}
{{#set: common-name=gdp pyrophosphokinase|gtp diphosphokinase}}
+
{{#set: reconstruction category=orthology}}
{{#set: ec-number=ec-2.7.6.5}}
+
{{#set: reconstruction tool=pantograph}}
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:20, 18 March 2021

Reaction FBA_

  • direction:
    • reversible
  • common-name:
    • fructose-bisphosphate aldolase cytosolic

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links