Difference between revisions of "FGAMSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-12978 == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-chain fatty acid-coa ligase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction TRANS-CINNAMATE-4-MONOOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.13.11 ec-1.14.13.11] =...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12978 ==
+
== Reaction TRANS-CINNAMATE-4-MONOOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** acyl-coa synthetase
 
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.14.13.11 ec-1.14.13.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-14018]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-674]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[COUMARATE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11355]]
−
* Gene: [[SJ08690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08692]]
+
* Gene: [[SJ11349]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08691]]
+
* Gene: [[SJ11348]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05591]]
+
* Gene: [[SJ09087]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY1F-467]], phenylpropanoid biosynthesis, initial reactions:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-1121]], suberin monomers biosynthesis:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10609 10609]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02253 R02253]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q04468 Q04468]
 +
** [http://www.uniprot.org/uniprot/P37115 P37115]
 +
** [http://www.uniprot.org/uniprot/Q9S8R8 Q9S8R8]
 +
** [http://www.uniprot.org/uniprot/P48522 P48522]
 +
** [http://www.uniprot.org/uniprot/Q42895 Q42895]
 +
** [http://www.uniprot.org/uniprot/O81928 O81928]
 +
** [http://www.uniprot.org/uniprot/O24315 O24315]
 +
** [http://www.uniprot.org/uniprot/Q43033 Q43033]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid-coa ligase|acyl-coa synthetase}}
+
{{#set: ec-number=ec-1.14.13.11}}
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana}}

Revision as of 11:22, 15 January 2021

Reaction TRANS-CINNAMATE-4-MONOOXYGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-467, phenylpropanoid biosynthesis, initial reactions:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis:
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





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