Difference between revisions of "FGAMSYN-RXN"

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(Created page with "Category:reaction == Reaction TRANS-CINNAMATE-4-MONOOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.13.11 ec-1.14.13.11] =...")
(Created page with "Category:reaction == Reaction DXS-RXN == * direction: ** left-to-right * common-name: ** 1-deoxy-d-xylulose-5-phosphate synthase ** 1-deoxyxylulose-5-phosphate synthase *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRANS-CINNAMATE-4-MONOOXYGENASE-RXN ==
+
== Reaction DXS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** 1-deoxy-d-xylulose-5-phosphate synthase
 +
** 1-deoxyxylulose-5-phosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.13.11 ec-1.14.13.11]
+
** [http://enzyme.expasy.org/EC/2.2.1.7 ec-2.2.1.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-674]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[COUMARATE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GAP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11355]]
+
* Gene: [[SJ15200]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11349]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11348]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09087]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-467]], phenylpropanoid biosynthesis, initial reactions:
+
* [[PWY-6891]], thiazole component of thiamine diphosphate biosynthesis II:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-1121]], suberin monomers biosynthesis:
+
* [[PWY-6892]], thiazole component of thiamine diphosphate biosynthesis I:
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97831
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10609 10609]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12606 12606]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02253 R02253]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q04468 Q04468]
 
−
** [http://www.uniprot.org/uniprot/P37115 P37115]
 
−
** [http://www.uniprot.org/uniprot/Q9S8R8 Q9S8R8]
 
−
** [http://www.uniprot.org/uniprot/P48522 P48522]
 
−
** [http://www.uniprot.org/uniprot/Q42895 Q42895]
 
−
** [http://www.uniprot.org/uniprot/O81928 O81928]
 
−
** [http://www.uniprot.org/uniprot/O24315 O24315]
 
−
** [http://www.uniprot.org/uniprot/Q43033 Q43033]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.14.13.11}}
+
{{#set: common-name=1-deoxy-d-xylulose-5-phosphate synthase|1-deoxyxylulose-5-phosphate synthase}}
−
{{#set: nb gene associated=4}}
+
{{#set: ec-number=ec-2.2.1.7}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:34, 15 March 2021

Reaction DXS-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-deoxy-d-xylulose-5-phosphate synthase
    • 1-deoxyxylulose-5-phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6891, thiazole component of thiamine diphosphate biosynthesis II:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6892, thiazole component of thiamine diphosphate biosynthesis I:
    • 5 reactions found over 7 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
    • 3 reactions found over 7 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97831
  • RHEA:
  • LIGAND-RXN:





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