Difference between revisions of "FGAMSYN-RXN"
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(Created page with "Category:reaction == Reaction RXN-14481 == * direction: ** left-to-right == Reaction formula == * 1 CPD-15360[c] '''+''' 1 S-ADENOSYLMETHIONINE[c] '''=>''' 1 ADE...") |
(Created page with "Category:reaction == Reaction RXN-15130 == * direction: ** left-to-right * common-name: ** cystathionine gamma-lyase ** cystathionine γ-lyase * ec-number: ** [http:/...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN- | + | == Reaction RXN-15130 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** cystathionine gamma-lyase | ||
| + | ** cystathionine γ-lyase | ||
| + | * ec-number: | ||
| + | ** [http://enzyme.expasy.org/EC/4.4.1.1 ec-4.4.1.1] | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[CYS]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ05358]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
| + | * Gene: [[SJ05357]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
| + | * Gene: [[SJ20026]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-801]], homocysteine and cysteine interconversion: | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| − | * | + | * LIGAND-RXN: |
| − | ** [http://www. | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01001 R01001] |
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P21357 P21357] | ||
| + | ** [http://www.uniprot.org/uniprot/P18757 P18757] | ||
| + | ** [http://www.uniprot.org/uniprot/P32929 P32929] | ||
| + | ** [http://www.uniprot.org/uniprot/P31373 P31373] | ||
| + | ** [http://www.uniprot.org/uniprot/Q47847 Q47847] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: nb gene associated= | + | {{#set: common-name=cystathionine γ-lyase|cystathionine gamma-lyase}} |
| − | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-4.4.1.1}} |
| + | {{#set: nb gene associated=3}} | ||
| + | {{#set: nb pathway associated=1}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | ||
Revision as of 13:15, 14 January 2021
Contents
Reaction RXN-15130
- direction:
- left-to-right
- common-name:
- cystathionine gamma-lyase
- cystathionine γ-lyase
- ec-number:
Reaction formula
- 1 L-CYSTATHIONINE[c] + 1 WATER[c] => 1 2-OXOBUTANOATE[c] + 1 AMMONIUM[c] + 1 CYS[c]
Gene(s) associated with this reaction
- Gene: SJ05358
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05357
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ20026
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-801, homocysteine and cysteine interconversion:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
