Difference between revisions of "FORMATETHFLIG-RXN"

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(Created page with "Category:reaction == Reaction RXN-1104 == * direction: ** left-to-right * common-name: ** caffeate 3-o-methyltransferase ** caffeate o-methyltransferase * ec-number: ** [h...")
(Created page with "Category:reaction == Reaction FORMATETHFLIG-RXN == * direction: ** reversible * common-name: ** formate:tetrahydropteroylpolyglutamate ligase ** formate-tetrahydrofolate l...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-1104 ==
+
== Reaction FORMATETHFLIG-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** caffeate 3-o-methyltransferase
+
** formate:tetrahydropteroylpolyglutamate ligase
−
** caffeate o-methyltransferase
+
** formate-tetrahydrofolate ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.68 ec-2.1.1.68]
+
** [http://enzyme.expasy.org/EC/6.3.4.3 ec-6.3.4.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-676]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07699]]
+
* Gene: [[SJ12991]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09797]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17434]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07523]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2181]], free phenylpropanoid acid biosynthesis:
+
* [[PWY-2161]], folate polyglutamylation:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7498]], phenylpropanoids methylation (ice plant):
+
* [[PWY-2201]], folate transformations I:
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis:
+
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
−
** '''2''' reactions found over '''12''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-1121]], suberin monomers biosynthesis:
+
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115886
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20226 20226]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20224 20224]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q41086 Q41086]
+
** [http://www.uniprot.org/uniprot/P09440 P09440]
−
** [http://www.uniprot.org/uniprot/P28002 P28002]
+
** [http://www.uniprot.org/uniprot/P13419 P13419]
−
** [http://www.uniprot.org/uniprot/Q00763 Q00763]
+
** [http://www.uniprot.org/uniprot/P07245 P07245]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P11586 P11586]
−
{{#set: common-name=caffeate o-methyltransferase|caffeate 3-o-methyltransferase}}
+
** [http://www.uniprot.org/uniprot/P21164 P21164]
−
{{#set: ec-number=ec-2.1.1.68}}
+
** [http://www.uniprot.org/uniprot/P28723 P28723]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
−
{{#set: nb pathway associated=4}}
+
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=formate:tetrahydropteroylpolyglutamate ligase|formate-tetrahydrofolate ligase}}
 +
{{#set: ec-number=ec-6.3.4.3}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction FORMATETHFLIG-RXN

  • direction:
    • reversible
  • common-name:
    • formate:tetrahydropteroylpolyglutamate ligase
    • formate-tetrahydrofolate ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2161, folate polyglutamylation:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-1722, formate assimilation into 5,10-methylenetetrahydrofolate:
    • 3 reactions found over 3 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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