Difference between revisions of "FORMYL-COA"

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(Created page with "Category:gene == Gene SJ06382 == * transcription-direction: ** positive * right-end-position: ** 154897 * left-end-position: ** 120228 * centisome-position: ** 25.259045...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] == * direction: ** left-to-right * common-name: ** xyloglucan xxlg oligosaccha...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ06382 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] ==
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* transcription-direction:
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* direction:
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** positive
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** left-to-right
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* right-end-position:
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* common-name:
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** 154897
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** xyloglucan xxlg oligosaccharide β-galactosidase
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* left-end-position:
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** beta-galactosidase
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** 120228
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** xxlg xyloglucan oligosaccharide β-galactosidase
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* centisome-position:
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* ec-number:
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** 25.259045   
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** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
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== Organism(s) associated with this gene  ==
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== Reaction formula ==
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* [[S.japonica_carotenoid_curated]]
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* 1 [[CPD-13376]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
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== Reaction(s) associated ==
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== Gene(s) associated with this reaction  ==
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* [[3.6.4.4-RXN]]
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* Gene: [[SJ04558]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[ATPASE-RXN]]
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* Gene: [[SJ14193]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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* Gene: [[SJ03139]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12195]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ10277]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12196]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN0-5462]]
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* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
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** Category: [[annotation]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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== Pathway(s) associated ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7210]]
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== External links  ==
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* [[PWY-7198]]
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{{#set: direction=left-to-right}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
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{{#set: common-name=xxlg xyloglucan oligosaccharide β-galactosidase|xyloglucan xxlg oligosaccharide β-galactosidase|beta-galactosidase}}
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* [[PWY-7184]]
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{{#set: ec-number=ec-3.2.1.23}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb gene associated=4}}
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* [[PWY-6545]]
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{{#set: nb pathway associated=1}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: transcription-direction=positive}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: right-end-position=154897}}
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{{#set: reconstruction comment=n.a}}
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{{#set: left-end-position=120228}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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{{#set: centisome-position=25.259045    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=6}}
 
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{{#set: nb pathway associated=4}}
 

Revision as of 09:28, 27 August 2019

Reaction RXN-12398

  • direction:
    • left-to-right
  • common-name:
    • xyloglucan xxlg oligosaccharide β-galactosidase
    • beta-galactosidase
    • xxlg xyloglucan oligosaccharide β-galactosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6807, xyloglucan degradation II (exoglucanase): PWY-6807
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=FORMYL-COA&oldid=34263"