Difference between revisions of "FPAIF"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 ta...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN] == * direction: ** left-to-right * common-name: ** n-acetylglucosaminy...")
Line 1: Line 1:
−
[[Category:pathway]]
+
[[Category:reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN] ==
−
* taxonomic-range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
+
** left-to-right
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
−
** l-arginine biosynthesis i (via l-ornithine)
+
** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
−
== Reaction(s) found ==
+
* ec-number:
−
* [[ARGSUCCINLYA-RXN]]
+
** [http://enzyme.expasy.org/EC/2.4.1.225 ec-2.4.1.225]
−
* [[ARGSUCCINSYN-RXN]]
+
== Reaction formula ==
−
* [[CARBPSYN-RXN]]
+
* 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
−
* [[ORNCARBAMTRANSFER-RXN]]
+
== Gene(s) associated with this reaction  ==
−
== Reaction(s) not found ==
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
All reactions of this pathways are in present
+
* Gene: [[SJ11522]]
−
{{#set: taxonomic-range=tax-2|tax-33090|tax-2157}}
+
** Category: [[annotation]]
−
{{#set: common-name=l-arginine biosynthesis i (via l-ornithine)}}
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
{{#set: nb reaction found=4}}
+
* Gene: [[SJ01052]]
−
{{#set: completion rate=1.0}}
+
** Category: [[annotation]]
−
{{#set: nb total reaction=4}}
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08300]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08295]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08296]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14184]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14192]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07780]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 +
== Pathway(s) ==
 +
* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
 +
** '''7''' reactions found over '''13''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20909 20909]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07335 R07335]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=n-acetylglucosaminyl-proteoglycan 4-&beta;-glucuronosyltransferase}}
 +
{{#set: ec-number=ec-2.4.1.225}}
 +
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:32, 27 August 2019

Reaction 2.4.1.225-RXN

  • direction:
    • left-to-right
  • common-name:
    • n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=FPAIF&oldid=37598"