Difference between revisions of "FPGFTh"

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(Created page with "Category:reaction == Reaction 3.4.21.92-RXN == * direction: ** left-to-right * common-name: ** atp-dependent clp protease * ec-number: ** [http://enzyme.expasy.org/EC/3.4....")
(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** shikimate dehydrogenase * ec-number: ** [http://enzyme.expas...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.21.92-RXN ==
+
== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** atp-dependent clp protease
+
** shikimate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.21.92 ec-3.4.21.92]
+
** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10493]]
−
* Gene: [[SJ17425]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10018]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16999]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18299]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 +
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12208 P12208]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/Q9JU33 Q9JU33]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/Q9PE41 Q9PE41]
+
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
−
** [http://www.uniprot.org/uniprot/P0A6G7 P0A6G7]
+
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
−
** [http://www.uniprot.org/uniprot/P56156 P56156]
+
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
−
** [http://www.uniprot.org/uniprot/P80244 P80244]
+
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
−
** [http://www.uniprot.org/uniprot/O51556 O51556]
+
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
−
** [http://www.uniprot.org/uniprot/O67357 O67357]
+
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
−
** [http://www.uniprot.org/uniprot/O83520 O83520]
+
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
−
** [http://www.uniprot.org/uniprot/Q9HYR9 Q9HYR9]
+
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
−
** [http://www.uniprot.org/uniprot/P63783 P63783]
+
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
−
** [http://www.uniprot.org/uniprot/O84712 O84712]
+
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
−
** [http://www.uniprot.org/uniprot/P43867 P43867]
+
** [http://www.uniprot.org/uniprot/P15770 P15770]
−
** [http://www.uniprot.org/uniprot/O51698 O51698]
+
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
−
** [http://www.uniprot.org/uniprot/P0A526 P0A526]
+
** [http://www.uniprot.org/uniprot/O65917 O65917]
−
** [http://www.uniprot.org/uniprot/Q9PLM0 Q9PLM0]
 
−
** [http://www.uniprot.org/uniprot/Q9K709 Q9K709]
 
−
** [http://www.uniprot.org/uniprot/Q9WZF9 Q9WZF9]
 
−
** [http://www.uniprot.org/uniprot/Q9RSZ7 Q9RSZ7]
 
−
** [http://www.uniprot.org/uniprot/Q9I2U1 Q9I2U1]
 
−
** [http://www.uniprot.org/uniprot/Q9K888 Q9K888]
 
−
** [http://www.uniprot.org/uniprot/P38002 P38002]
 
−
** [http://www.uniprot.org/uniprot/Q9Z759 Q9Z759]
 
−
** [http://www.uniprot.org/uniprot/Q9Z832 Q9Z832]
 
−
** [http://www.uniprot.org/uniprot/P54413 P54413]
 
−
** [http://www.uniprot.org/uniprot/Q9KQS6 Q9KQS6]
 
−
** [http://www.uniprot.org/uniprot/Q9ZD29 Q9ZD29]
 
−
** [http://www.uniprot.org/uniprot/Q9ZL50 Q9ZL50]
 
−
** [http://www.uniprot.org/uniprot/P12209 P12209]
 
−
** [http://www.uniprot.org/uniprot/Q7M2F6 Q7M2F6]
 
−
** [http://www.uniprot.org/uniprot/P24064 P24064]
 
−
** [http://www.uniprot.org/uniprot/P36387 P36387]
 
−
** [http://www.uniprot.org/uniprot/P26567 P26567]
 
−
** [http://www.uniprot.org/uniprot/P48883 P48883]
 
−
** [http://www.uniprot.org/uniprot/Q16740 Q16740]
 
−
** [http://www.uniprot.org/uniprot/P54416 P54416]
 
−
** [http://www.uniprot.org/uniprot/Q59993 Q59993]
 
−
** [http://www.uniprot.org/uniprot/P74467 P74467]
 
−
** [http://www.uniprot.org/uniprot/P30063 P30063]
 
−
** [http://www.uniprot.org/uniprot/Q36863 Q36863]
 
−
** [http://www.uniprot.org/uniprot/Q42886 Q42886]
 
−
** [http://www.uniprot.org/uniprot/P56317 P56317]
 
−
** [http://www.uniprot.org/uniprot/P41609 P41609]
 
−
** [http://www.uniprot.org/uniprot/Q9X7R9 Q9X7R9]
 
−
** [http://www.uniprot.org/uniprot/O48931 O48931]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=atp-dependent clp protease}}
+
{{#set: common-name=shikimate dehydrogenase}}
−
{{#set: ec-number=ec-3.4.21.92}}
+
{{#set: ec-number=ec-1.1.1.25}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:06, 14 January 2021

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • shikimate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=FPGFTh&oldid=103686"