Difference between revisions of "FPPS"

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(Created page with "Category:reaction == Reaction PHOSPHOLIPASE-A2-RXN == * direction: ** left-to-right * common-name: ** phospholipase a2 ** phosphatidylcholine 2-acylhydrolase * ec-number:...")
(Created page with "Category:reaction == Reaction 4.4.1.14-RXN == * direction: ** left-to-right * common-name: ** 1-aminocyclopropane-1-carboxylate synthase * ec-number: ** [http://enzyme.exp...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSPHOLIPASE-A2-RXN ==
+
== Reaction 4.4.1.14-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phospholipase a2
+
** 1-aminocyclopropane-1-carboxylate synthase
−
** phosphatidylcholine 2-acylhydrolase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.4 ec-3.1.1.4]
+
** [http://enzyme.expasy.org/EC/4.4.1.14 ec-4.4.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHATIDYLCHOLINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-Lysophosphatidylcholines]][c] '''+''' 1 [[Fatty-Acids]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[CPD-68]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ04622]]
−
* Gene: [[SJ12662]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09888]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16853]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13501]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18009]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06461]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02841]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6803]], phosphatidylcholine acyl editing:
+
* [[ETHYL-PWY]], ethylene biosynthesis I (plants):
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[LIPASYN-PWY]], phospholipases:
+
* [[PWY-7270]], L-methionine salvage cycle II (plants):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15802 15802]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21747 21747]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01313 R01313]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00179 R00179]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P04362 P04362]
+
** [http://www.uniprot.org/uniprot/P23279 P23279]
−
** [http://www.uniprot.org/uniprot/Q7M335 Q7M335]
+
** [http://www.uniprot.org/uniprot/Q06402 Q06402]
−
** [http://www.uniprot.org/uniprot/P14424 P14424]
+
** [http://www.uniprot.org/uniprot/Q07215 Q07215]
−
** [http://www.uniprot.org/uniprot/P14418 P14418]
+
** [http://www.uniprot.org/uniprot/Q42881 Q42881]
−
** [http://www.uniprot.org/uniprot/P19000 P19000]
+
** [http://www.uniprot.org/uniprot/Q00379 Q00379]
−
** [http://www.uniprot.org/uniprot/Q7M3E5 Q7M3E5]
+
** [http://www.uniprot.org/uniprot/Q06429 Q06429]
−
** [http://www.uniprot.org/uniprot/P14420 P14420]
+
** [http://www.uniprot.org/uniprot/Q9SB01 Q9SB01]
−
** [http://www.uniprot.org/uniprot/P20258 P20258]
+
** [http://www.uniprot.org/uniprot/O24062 O24062]
−
** [http://www.uniprot.org/uniprot/P14423 P14423]
+
** [http://www.uniprot.org/uniprot/Q9SB94 Q9SB94]
−
** [http://www.uniprot.org/uniprot/Q7LZG4 Q7LZG4]
+
** [http://www.uniprot.org/uniprot/Q9FUC3 Q9FUC3]
−
** [http://www.uniprot.org/uniprot/P20250 P20250]
+
** [http://www.uniprot.org/uniprot/Q94GA4 Q94GA4]
−
** [http://www.uniprot.org/uniprot/P21790 P21790]
+
** [http://www.uniprot.org/uniprot/O24217 O24217]
−
** [http://www.uniprot.org/uniprot/P21789 P21789]
+
** [http://www.uniprot.org/uniprot/Q9S9C5 Q9S9C5]
−
** [http://www.uniprot.org/uniprot/P81480 P81480]
+
** [http://www.uniprot.org/uniprot/Q43309 Q43309]
−
** [http://www.uniprot.org/uniprot/P47712 P47712]
+
** [http://www.uniprot.org/uniprot/P23599 P23599]
−
** [http://www.uniprot.org/uniprot/P20476 P20476]
+
** [http://www.uniprot.org/uniprot/Q00257 Q00257]
−
** [http://www.uniprot.org/uniprot/P24644 P24644]
+
** [http://www.uniprot.org/uniprot/Q43679 Q43679]
−
** [http://www.uniprot.org/uniprot/P81478 P81478]
+
** [http://www.uniprot.org/uniprot/Q07223 Q07223]
−
** [http://www.uniprot.org/uniprot/P06859 P06859]
+
** [http://www.uniprot.org/uniprot/Q7M286 Q7M286]
−
** [http://www.uniprot.org/uniprot/P39877 P39877]
+
** [http://www.uniprot.org/uniprot/P27486 P27486]
−
** [http://www.uniprot.org/uniprot/P48076 P48076]
+
** [http://www.uniprot.org/uniprot/P18485 P18485]
−
** [http://www.uniprot.org/uniprot/Q7M442 Q7M442]
+
** [http://www.uniprot.org/uniprot/P29535 P29535]
−
** [http://www.uniprot.org/uniprot/P18997 P18997]
+
** [http://www.uniprot.org/uniprot/Q41693 Q41693]
−
** [http://www.uniprot.org/uniprot/P20259 P20259]
+
** [http://www.uniprot.org/uniprot/Q41694 Q41694]
−
** [http://www.uniprot.org/uniprot/P20251 P20251]
+
** [http://www.uniprot.org/uniprot/P31531 P31531]
−
** [http://www.uniprot.org/uniprot/P21791 P21791]
+
** [http://www.uniprot.org/uniprot/Q43858 Q43858]
−
** [http://www.uniprot.org/uniprot/P81479 P81479]
+
** [http://www.uniprot.org/uniprot/Q43753 Q43753]
−
** [http://www.uniprot.org/uniprot/P51972 P51972]
+
** [http://www.uniprot.org/uniprot/Q43813 Q43813]
−
** [http://www.uniprot.org/uniprot/Q7M4I6 Q7M4I6]
+
** [http://www.uniprot.org/uniprot/Q43059 Q43059]
−
** [http://www.uniprot.org/uniprot/Q7M4I5 Q7M4I5]
+
** [http://www.uniprot.org/uniprot/Q43167 Q43167]
−
** [http://www.uniprot.org/uniprot/P14421 P14421]
+
** [http://www.uniprot.org/uniprot/Q43747 Q43747]
−
** [http://www.uniprot.org/uniprot/P20260 P20260]
+
** [http://www.uniprot.org/uniprot/Q43074 Q43074]
−
** [http://www.uniprot.org/uniprot/P20252 P20252]
+
** [http://www.uniprot.org/uniprot/Q42655 Q42655]
−
** [http://www.uniprot.org/uniprot/P21792 P21792]
+
** [http://www.uniprot.org/uniprot/Q42718 Q42718]
−
** [http://www.uniprot.org/uniprot/Q7LZQ5 Q7LZQ5]
+
** [http://www.uniprot.org/uniprot/Q43755 Q43755]
−
** [http://www.uniprot.org/uniprot/P20253 P20253]
+
** [http://www.uniprot.org/uniprot/Q43756 Q43756]
−
** [http://www.uniprot.org/uniprot/P20381 P20381]
+
** [http://www.uniprot.org/uniprot/Q43165 Q43165]
−
** [http://www.uniprot.org/uniprot/Q7LZQ7 Q7LZQ7]
+
** [http://www.uniprot.org/uniprot/O22464 O22464]
−
** [http://www.uniprot.org/uniprot/P20254 P20254]
+
** [http://www.uniprot.org/uniprot/Q43166 Q43166]
−
** [http://www.uniprot.org/uniprot/P20255 P20255]
+
** [http://www.uniprot.org/uniprot/Q43168 Q43168]
−
** [http://www.uniprot.org/uniprot/Q92147 Q92147]
+
** [http://www.uniprot.org/uniprot/Q37001 Q37001]
−
** [http://www.uniprot.org/uniprot/P20256 P20256]
+
** [http://www.uniprot.org/uniprot/Q43201 Q43201]
−
** [http://www.uniprot.org/uniprot/P20257 P20257]
+
** [http://www.uniprot.org/uniprot/Q43204 Q43204]
−
** [http://www.uniprot.org/uniprot/P47711 P47711]
+
** [http://www.uniprot.org/uniprot/O49904 O49904]
−
** [http://www.uniprot.org/uniprot/P31482 P31482]
+
** [http://www.uniprot.org/uniprot/Q42984 Q42984]
−
** [http://www.uniprot.org/uniprot/P62023 P62023]
+
** [http://www.uniprot.org/uniprot/O24220 O24220]
−
** [http://www.uniprot.org/uniprot/P11407 P11407]
+
** [http://www.uniprot.org/uniprot/Q07262 Q07262]
−
** [http://www.uniprot.org/uniprot/P18999 P18999]
+
** [http://www.uniprot.org/uniprot/O24219 O24219]
−
** [http://www.uniprot.org/uniprot/O42187 O42187]
+
** [http://www.uniprot.org/uniprot/P93235 P93235]
−
** [http://www.uniprot.org/uniprot/Q98996 Q98996]
+
** [http://www.uniprot.org/uniprot/Q9STR4 Q9STR4]
−
** [http://www.uniprot.org/uniprot/Q9NP80 Q9NP80]
+
** [http://www.uniprot.org/uniprot/Q9T065 Q9T065]
−
** [http://www.uniprot.org/uniprot/P14615 P14615]
+
** [http://www.uniprot.org/uniprot/O24609 O24609]
−
** [http://www.uniprot.org/uniprot/P25498 P25498]
+
** [http://www.uniprot.org/uniprot/Q42893 Q42893]
−
** [http://www.uniprot.org/uniprot/Q7M3V4 Q7M3V4]
+
** [http://www.uniprot.org/uniprot/Q96579 Q96579]
−
** [http://www.uniprot.org/uniprot/Q7M334 Q7M334]
+
** [http://www.uniprot.org/uniprot/Q96580 Q96580]
−
** [http://www.uniprot.org/uniprot/Q7M1V0 Q7M1V0]
+
** [http://www.uniprot.org/uniprot/P93234 P93234]
−
** [http://www.uniprot.org/uniprot/P24606 P24606]
+
** [http://www.uniprot.org/uniprot/O24432 O24432]
−
** [http://www.uniprot.org/uniprot/P04417 P04417]
+
** [http://www.uniprot.org/uniprot/O65017 O65017]
−
** [http://www.uniprot.org/uniprot/P00621 P00621]
+
** [http://www.uniprot.org/uniprot/O65018 O65018]
−
** [http://www.uniprot.org/uniprot/P00620 P00620]
+
** [http://www.uniprot.org/uniprot/Q42668 Q42668]
−
** [http://www.uniprot.org/uniprot/P00622 P00622]
+
** [http://www.uniprot.org/uniprot/O49819 O49819]
−
** [http://www.uniprot.org/uniprot/P00593 P00593]
+
** [http://www.uniprot.org/uniprot/O81957 O81957]
−
** [http://www.uniprot.org/uniprot/P06596 P06596]
+
** [http://www.uniprot.org/uniprot/O65159 O65159]
−
** [http://www.uniprot.org/uniprot/P00610 P00610]
+
** [http://www.uniprot.org/uniprot/Q41688 Q41688]
−
** [http://www.uniprot.org/uniprot/P16354 P16354]
+
** [http://www.uniprot.org/uniprot/O24544 O24544]
−
** [http://www.uniprot.org/uniprot/P00630 P00630]
+
** [http://www.uniprot.org/uniprot/Q39931 Q39931]
−
** [http://www.uniprot.org/uniprot/P00594 P00594]
+
** [http://www.uniprot.org/uniprot/Q9SAR0 Q9SAR0]
−
** [http://www.uniprot.org/uniprot/P04054 P04054]
+
** [http://www.uniprot.org/uniprot/P37821 P37821]
−
** [http://www.uniprot.org/uniprot/P14555 P14555]
+
** [http://www.uniprot.org/uniprot/O24061 O24061]
−
** [http://www.uniprot.org/uniprot/P00606 P00606]
+
** [http://www.uniprot.org/uniprot/Q9M2Y8 Q9M2Y8]
−
** [http://www.uniprot.org/uniprot/P00618 P00618]
+
** [http://www.uniprot.org/uniprot/Q9SMH1 Q9SMH1]
−
** [http://www.uniprot.org/uniprot/P17934 P17934]
+
** [http://www.uniprot.org/uniprot/Q9SEJ9 Q9SEJ9]
−
** [http://www.uniprot.org/uniprot/P00627 P00627]
 
−
** [http://www.uniprot.org/uniprot/P00628 P00628]
 
−
** [http://www.uniprot.org/uniprot/P00629 P00629]
 
−
** [http://www.uniprot.org/uniprot/P00611 P00611]
 
−
** [http://www.uniprot.org/uniprot/P00612 P00612]
 
−
** [http://www.uniprot.org/uniprot/P00613 P00613]
 
−
** [http://www.uniprot.org/uniprot/P00602 P00602]
 
−
** [http://www.uniprot.org/uniprot/P00599 P00599]
 
−
** [http://www.uniprot.org/uniprot/P00603 P00603]
 
−
** [http://www.uniprot.org/uniprot/P00600 P00600]
 
−
** [http://www.uniprot.org/uniprot/P00604 P00604]
 
−
** [http://www.uniprot.org/uniprot/P00601 P00601]
 
−
** [http://www.uniprot.org/uniprot/P00598 P00598]
 
−
** [http://www.uniprot.org/uniprot/P00609 P00609]
 
−
** [http://www.uniprot.org/uniprot/P00608 P00608]
 
−
** [http://www.uniprot.org/uniprot/P00614 P00614]
 
−
** [http://www.uniprot.org/uniprot/P00616 P00616]
 
−
** [http://www.uniprot.org/uniprot/P00592 P00592]
 
−
** [http://www.uniprot.org/uniprot/P04416 P04416]
 
−
** [http://www.uniprot.org/uniprot/P00595 P00595]
 
−
** [http://www.uniprot.org/uniprot/P00623 P00623]
 
−
** [http://www.uniprot.org/uniprot/P00624 P00624]
 
−
** [http://www.uniprot.org/uniprot/P24027 P24027]
 
−
** [http://www.uniprot.org/uniprot/P62022 P62022]
 
−
** [http://www.uniprot.org/uniprot/P04055 P04055]
 
−
** [http://www.uniprot.org/uniprot/P04056 P04056]
 
−
** [http://www.uniprot.org/uniprot/P04057 P04057]
 
−
** [http://www.uniprot.org/uniprot/P00625 P00625]
 
−
** [http://www.uniprot.org/uniprot/P06860 P06860]
 
−
** [http://www.uniprot.org/uniprot/P00626 P00626]
 
−
** [http://www.uniprot.org/uniprot/P14422 P14422]
 
−
** [http://www.uniprot.org/uniprot/P07037 P07037]
 
−
** [http://www.uniprot.org/uniprot/P10116 P10116]
 
−
** [http://www.uniprot.org/uniprot/P08873 P08873]
 
−
** [http://www.uniprot.org/uniprot/P08872 P08872]
 
−
** [http://www.uniprot.org/uniprot/P14411 P14411]
 
−
** [http://www.uniprot.org/uniprot/P15445 P15445]
 
−
** [http://www.uniprot.org/uniprot/P20474 P20474]
 
−
** [http://www.uniprot.org/uniprot/P24605 P24605]
 
−
** [http://www.uniprot.org/uniprot/P22640 P22640]
 
−
** [http://www.uniprot.org/uniprot/P24293 P24293]
 
−
** [http://www.uniprot.org/uniprot/P24294 P24294]
 
−
** [http://www.uniprot.org/uniprot/P34180 P34180]
 
−
** [http://www.uniprot.org/uniprot/P80003 P80003]
 
−
** [http://www.uniprot.org/uniprot/P31854 P31854]
 
−
** [http://www.uniprot.org/uniprot/P43434 P43434]
 
−
** [http://www.uniprot.org/uniprot/Q7LZG3 Q7LZG3]
 
−
** [http://www.uniprot.org/uniprot/P43318 P43318]
 
−
** [http://www.uniprot.org/uniprot/Q90W39 Q90W39]
 
−
** [http://www.uniprot.org/uniprot/Q10754 Q10754]
 
−
** [http://www.uniprot.org/uniprot/Q10755 Q10755]
 
−
** [http://www.uniprot.org/uniprot/Q10756 Q10756]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phospholipase a2|phosphatidylcholine 2-acylhydrolase}}
+
{{#set: common-name=1-aminocyclopropane-1-carboxylate synthase}}
−
{{#set: ec-number=ec-3.1.1.4}}
+
{{#set: ec-number=ec-4.4.1.14}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction 4.4.1.14-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-aminocyclopropane-1-carboxylate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ETHYL-PWY, ethylene biosynthesis I (plants):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7270, L-methionine salvage cycle II (plants):
    • 4 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=FPPS&oldid=116508"