Difference between revisions of "FPPS"
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(Created page with "Category:reaction == Reaction RXN-16294 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/6.3.2.47 ec-6.3.2.47] == Reaction formula == * 1 ATP...") |
(Created page with "Category:reaction == Reaction FORMYLTHFDEFORMYL-RXN == * direction: ** left-to-right * common-name: ** formyltetrahydrofolate deformylase * ec-number: ** [http://enzyme.ex...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction FORMYLTHFDEFORMYL-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
| + | * common-name: | ||
| + | ** formyltetrahydrofolate deformylase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.1.10 ec-3.5.1.10] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ15379]] |
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-7909]], formaldehyde oxidation VII (THF pathway): | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[P164-PWY]], purine nucleobases degradation I (anaerobic): | ||
| + | ** '''6''' reactions found over '''17''' reactions in the full pathway | ||
| + | * [[PWY-5497]], purine nucleobases degradation II (anaerobic): | ||
| + | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
| + | * [[PWY-2201]], folate transformations I: | ||
| + | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: ec-number=ec- | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19834 19834] |
| − | {{#set: nb gene associated= | + | * LIGAND-RXN: |
| − | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00944 R00944] |
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P37051 P37051] | ||
| + | ** [http://www.uniprot.org/uniprot/Q03432 Q03432] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9PPC9 Q9PPC9] | ||
| + | ** [http://www.uniprot.org/uniprot/Q46339 Q46339] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9X7F7 Q9X7F7] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=formyltetrahydrofolate deformylase}} | ||
| + | {{#set: ec-number=ec-3.5.1.10}} | ||
| + | {{#set: nb gene associated=1}} | ||
| + | {{#set: nb pathway associated=4}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome}} | {{#set: reconstruction source=saccharina_japonica_genome}} | ||
Revision as of 15:36, 5 January 2021
Contents
Reaction FORMYLTHFDEFORMYL-RXN
- direction:
- left-to-right
- common-name:
- formyltetrahydrofolate deformylase
- ec-number:
Reaction formula
- 1 FORMYL-THF-GLU-N[c] + 1 WATER[c] => 1 FORMATE[c] + 1 PROTON[c] + 1 THF-GLU-N[c]
Gene(s) associated with this reaction
- Gene: SJ15379
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7909, formaldehyde oxidation VII (THF pathway):
- 3 reactions found over 4 reactions in the full pathway
- P164-PWY, purine nucleobases degradation I (anaerobic):
- 6 reactions found over 17 reactions in the full pathway
- PWY-5497, purine nucleobases degradation II (anaerobic):
- 10 reactions found over 24 reactions in the full pathway
- PWY-2201, folate transformations I:
- 9 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
