Difference between revisions of "FPPSYN-RXN"

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(Created page with "Category:reaction == Reaction HOLO-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** holo-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction FPPSYN-RXN == * direction: ** left-to-right * common-name: ** farnesyl diphosphate synthase ** geranyltranstransferase * ec-number: ** [http:...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOLO-ACP-SYNTH-RXN ==
+
== Reaction FPPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** holo-[acyl-carrier-protein] synthase
+
** farnesyl diphosphate synthase
 +
** geranyltranstransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
+
** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[apo-ACP]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00669]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ20033]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09945]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19702]]
+
* Gene: [[SJ10346]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02885]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00173]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6012]], acyl carrier protein metabolism:
+
* [[PWY-6859]], all-trans-farnesol biosynthesis:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6012-1]], acyl carrier protein activation:
+
* [[PWY-7736]], stellatic acid biosynthesis:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR99634
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12069 12069]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
+
** [http://www.uniprot.org/uniprot/P08524 P08524]
−
** [http://www.uniprot.org/uniprot/P24224 P24224]
+
** [http://www.uniprot.org/uniprot/P05369 P05369]
−
** [http://www.uniprot.org/uniprot/O84102 O84102]
+
** [http://www.uniprot.org/uniprot/P14324 P14324]
−
** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
+
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
−
** [http://www.uniprot.org/uniprot/O83800 O83800]
+
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
−
** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
+
** [http://www.uniprot.org/uniprot/P45204 P45204]
−
** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
+
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
−
** [http://www.uniprot.org/uniprot/O25488 O25488]
+
** [http://www.uniprot.org/uniprot/P49350 P49350]
−
** [http://www.uniprot.org/uniprot/P96618 P96618]
+
** [http://www.uniprot.org/uniprot/P22939 P22939]
−
** [http://www.uniprot.org/uniprot/O66995 O66995]
+
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
−
** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
+
** [http://www.uniprot.org/uniprot/P49349 P49349]
 +
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
 +
** [http://www.uniprot.org/uniprot/P49351 P49351]
 +
** [http://www.uniprot.org/uniprot/P49352 P49352]
 +
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 +
** [http://www.uniprot.org/uniprot/O24241 O24241]
 +
** [http://www.uniprot.org/uniprot/O24242 O24242]
 +
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 +
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 +
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 +
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 +
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 +
** [http://www.uniprot.org/uniprot/P49353 P49353]
 +
** [http://www.uniprot.org/uniprot/O04882 O04882]
 +
** [http://www.uniprot.org/uniprot/O65004 O65004]
 +
** [http://www.uniprot.org/uniprot/O14230 O14230]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=holo-[acyl-carrier-protein] synthase}}
+
{{#set: common-name=geranyltranstransferase|farnesyl diphosphate synthase}}
−
{{#set: ec-number=ec-2.7.8.7}}
+
{{#set: ec-number=ec-2.5.1.10}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction FPPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • farnesyl diphosphate synthase
    • geranyltranstransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6859, all-trans-farnesol biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis:
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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