Difference between revisions of "GABATRANSAM-RXN"

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(Created page with "Category:reaction == Reaction 2-KETO-ADIPATE-DEHYDROG-RXN == * direction: ** left-to-right == Reaction formula == * 1 2K-ADIPATE[c] '''+''' 1 CO-A[c] '''+''' 1 N...")
(Created page with "Category:reaction == Reaction GABATRANSAM-RXN == * direction: ** reversible * common-name: ** 4-aminobutyrate transaminase * ec-number: ** [http://enzyme.expasy.org/EC/2.6...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2-KETO-ADIPATE-DEHYDROG-RXN ==
+
== Reaction GABATRANSAM-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** 4-aminobutyrate transaminase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2K-ADIPATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[GLUTARYL-COA]][c] '''+''' 1 [[NADH]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[SUCC-S-ALD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19201]]
+
* Gene: [[SJ07892]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13629]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06474]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA:
+
* [[GLUDEG-I-PWY]], GABA shunt:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway):
+
* [[PWY-6536]], 4-aminobutanoate degradation III:
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian):
+
* [[PWY-6537]], 4-aminobutanoate degradation II:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6535]], 4-aminobutanoate degradation I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4321]], L-glutamate degradation IV:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[P181-PWY]], nicotine degradation I (pyridine pathway):
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR95186
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30796 30796]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23355 23355]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01933 R01933]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P22256 P22256]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/P50457 P50457]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P50554 P50554]
 +
** [http://www.uniprot.org/uniprot/P80404 P80404]
 +
** [http://www.uniprot.org/uniprot/P14010 P14010]
 +
** [http://www.uniprot.org/uniprot/P17649 P17649]
 +
** [http://www.uniprot.org/uniprot/P40829 P40829]
 +
** [http://www.uniprot.org/uniprot/O13837 O13837]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=4-aminobutyrate transaminase}}
 +
{{#set: ec-number=ec-2.6.1.19}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=7}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction GABATRANSAM-RXN

  • direction:
    • reversible
  • common-name:
    • 4-aminobutyrate transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUDEG-I-PWY, GABA shunt:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6536, 4-aminobutanoate degradation III:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6537, 4-aminobutanoate degradation II:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV:
    • 3 reactions found over 5 reactions in the full pathway
  • P181-PWY, nicotine degradation I (pyridine pathway):
    • 2 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





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