Difference between revisions of "GABATRANSAM-RXN"

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(Created page with "Category:reaction == Reaction ExchangeSeed-Light == * direction: ** reversible == Reaction formula == * 1.0 Light[C-BOUNDARY] '''<=>''' 1.0 Light[e] == Gene(s) ass...")
(Created page with "Category:reaction == Reaction GABATRANSAM-RXN == * direction: ** reversible * common-name: ** 4-aminobutyrate transaminase * ec-number: ** [http://enzyme.expasy.org/EC/2.6...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-Light ==
+
== Reaction GABATRANSAM-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** 4-aminobutyrate transaminase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[Light]][C-BOUNDARY] '''<=>''' 1.0 [[Light]][e]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[SUCC-S-ALD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ07892]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[GLUDEG-I-PWY]], GABA shunt:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6536]], 4-aminobutanoate degradation III:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6537]], 4-aminobutanoate degradation II:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6535]], 4-aminobutanoate degradation I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4321]], L-glutamate degradation IV:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[P181-PWY]], nicotine degradation I (pyridine pathway):
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR95186
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23355 23355]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P22256 P22256]
 +
** [http://www.uniprot.org/uniprot/P50457 P50457]
 +
** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
 +
** [http://www.uniprot.org/uniprot/P50554 P50554]
 +
** [http://www.uniprot.org/uniprot/P80404 P80404]
 +
** [http://www.uniprot.org/uniprot/P14010 P14010]
 +
** [http://www.uniprot.org/uniprot/P17649 P17649]
 +
** [http://www.uniprot.org/uniprot/P40829 P40829]
 +
** [http://www.uniprot.org/uniprot/O13837 O13837]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=4-aminobutyrate transaminase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-2.6.1.19}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction GABATRANSAM-RXN

  • direction:
    • reversible
  • common-name:
    • 4-aminobutyrate transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUDEG-I-PWY, GABA shunt:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6536, 4-aminobutanoate degradation III:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6537, 4-aminobutanoate degradation II:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV:
    • 3 reactions found over 5 reactions in the full pathway
  • P181-PWY, nicotine degradation I (pyridine pathway):
    • 2 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





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