Difference between revisions of "GABATRANSAM-RXN"

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(Created page with "Category:reaction == Reaction GLYCERONE-KINASE-RXN == * direction: ** left-to-right * common-name: ** dihydroxyacetone kinase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction RXN-14048 == * direction: ** left-to-right * common-name: ** cystathionine γ-lyase ** cystathionine gamma-lyase == Reaction formula ==...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYCERONE-KINASE-RXN ==
+
== Reaction RXN-14048 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dihydroxyacetone kinase
+
** cystathionine γ-lyase
−
* ec-number:
+
** cystathionine gamma-lyase
−
** [http://enzyme.expasy.org/EC/2.7.1.29 ec-2.7.1.29]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DIHYDROXYACETONE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[L-CYSTATHIONINE]][c] '''=>''' 1 [[CPD-15056]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18789]]
+
* Gene: [[SJ05357]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05358]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
+
* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine):
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6131]], glycerol degradation II:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R08632 R08632]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15774 15774]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24913 24913]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01011 R01011]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P43550 P43550]
 
−
** [http://www.uniprot.org/uniprot/O13902 O13902]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dihydroxyacetone kinase}}
+
{{#set: common-name=cystathionine γ-lyase|cystathionine gamma-lyase}}
−
{{#set: ec-number=ec-2.7.1.29}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:18, 14 January 2021

Reaction RXN-14048

  • direction:
    • left-to-right
  • common-name:
    • cystathionine γ-lyase
    • cystathionine gamma-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOCYSDEGR-PWY, L-cysteine biosynthesis III (from L-homocysteine):
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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