Difference between revisions of "GAPDH"

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(Created page with "Category:reaction == Reaction RIBOKIN-RXN == * direction: ** left-to-right * common-name: ** ribokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.15 ec-2.7.1.15]...")
(Created page with "Category:reaction == Reaction GAPDH_ == * direction: ** reversible * common-name: ** glyceraldehyde 3-phosphate dehydrogenase (nad) == Reaction formula == * 1.0 GAP[c]...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBOKIN-RXN ==
+
== Reaction GAPDH_ ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** ribokinase
+
** glyceraldehyde 3-phosphate dehydrogenase (nad)
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.1.15 ec-2.7.1.15]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-15318]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[GAP]][c] '''+''' 1.0 [[NAD]][c] '''+''' 1.0 [[Pi]][c] '''<=>''' 1.0 [[DPG]][c] '''+''' 1.0 [[NADH]][c] '''+''' 1.0 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01736]]
+
* Gene: [[SJ07665]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ07367]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08247]]
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* Gene: [[SJ05251]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOKIN-PWY]], ribose phosphorylation:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13698 13698]
+
{{#set: common-name=glyceraldehyde 3-phosphate dehydrogenase (nad)}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
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{{#set: nb pathway associated=0}}
−
* UNIPROT:
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P44331 P44331]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P36945 P36945]
 
−
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
 
−
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
 
−
** [http://www.uniprot.org/uniprot/P25332 P25332]
 
−
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
 
−
** [http://www.uniprot.org/uniprot/O93727 O93727]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=ribokinase}}
 
−
{{#set: ec-number=ec-2.7.1.15}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:20, 18 March 2021

Reaction GAPDH_

  • direction:
    • reversible
  • common-name:
    • glyceraldehyde 3-phosphate dehydrogenase (nad)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GAPDH&oldid=141028"