Difference between revisions of "GART-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-POLYMERASE-SUBUNIT-KINASE-RXN RNA-POLYMERASE-SUBUNIT-KINASE-RXN] == * direction: ** reversible...")
(Created page with "Category:reaction == Reaction GART-RXN == * direction: ** reversible * common-name: ** phosphoribosylglycinamide formyltransferase * ec-number: ** [http://enzyme.expasy.or...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-POLYMERASE-SUBUNIT-KINASE-RXN RNA-POLYMERASE-SUBUNIT-KINASE-RXN] ==
+
== Reaction GART-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** rna polymerase ii carboxy-terminal domain kinase
+
** phosphoribosylglycinamide formyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.11.23 ec-2.7.11.23]
+
** [http://enzyme.expasy.org/EC/2.1.2.2 ec-2.1.2.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DNA-directed-RNA-polymerases]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Phospho-DNA-directed-RNA-polymerases]][c]
+
* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ06408]]
−
* Gene: [[SJ09656]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19563]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09816]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12736]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02746]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09709]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00020]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17133]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09069]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03118]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19909]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18702]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10758]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115906
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15056 15056]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04358 R04358]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04325 R04325]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q03957 Q03957]
+
** [http://www.uniprot.org/uniprot/P21872 P21872]
 +
** [http://www.uniprot.org/uniprot/P00967 P00967]
 +
** [http://www.uniprot.org/uniprot/P16340 P16340]
 +
** [http://www.uniprot.org/uniprot/P22102 P22102]
 +
** [http://www.uniprot.org/uniprot/Q9PIU2 Q9PIU2]
 +
** [http://www.uniprot.org/uniprot/Q9JTJ1 Q9JTJ1]
 +
** [http://www.uniprot.org/uniprot/P43846 P43846]
 +
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 +
** [http://www.uniprot.org/uniprot/Q42805 Q42805]
 +
** [http://www.uniprot.org/uniprot/Q9UUK7 Q9UUK7]
 +
** [http://www.uniprot.org/uniprot/P12040 P12040]
 +
** [http://www.uniprot.org/uniprot/P08179 P08179]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=rna polymerase ii carboxy-terminal domain kinase}}
+
{{#set: common-name=phosphoribosylglycinamide formyltransferase}}
−
{{#set: ec-number=ec-2.7.11.23}}
+
{{#set: ec-number=ec-2.1.2.2}}
−
{{#set: nb gene associated=13}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction GART-RXN

  • direction:
    • reversible
  • common-name:
    • phosphoribosylglycinamide formyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6613, tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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